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[174063_at]

Description C66468 /REP_DB=TREMBL Accession /GB=C66468 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk222b1 : 5prime end, single read.
Cluster 6grp_total > 53      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 7.9
(-3)
A 		9.8
(-0.9)
A 		13.3
(3)
A 		10.7
(0.1)
A 		5
B 9.6
(-2.3)
A 		29.5
(3)
A 		8.5
(-2.6)
A 		7.1
(-3)
A 		22
C 42.6
(3)
A 		32.5
(1.1)
A 		11.3
(-3)
A 		11.8
(-2.9)
A 		31
avr 20
(1.3) 		23.9
(3) 		11
(-2.5) 		9.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.3
(-1.8)
A 		3.6
(-2.9)
A 		28.9
(3)
A 		9.1
(-1.6)
A 		14.7
(-0.3)
A 		3
(-3)
A 		26
B 9.4
(3)
A 		6.9
(0.4)
A 		6.6
(0.1)
A 		4.8
(-1.8)
A 		5.1
(-1.5)
A 		3.7
(-3)
A 		6
C 3.9
(-3)
A 		7.6
(0.7)
A 		6.8
(-0.1)
A 		9.9
(3)
A 		7.3
(0.4)
A 		4.7
(-2.2)
A 		6
avr 7.2
(-1) 		6
(-1.7) 		14.1
(3) 		7.9
(-0.6) 		9
(0) 		3.8
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(1.1)
A 		2.1
(-1.4)
A 		3.5
(3)
A 		1.6
(-3)
A 		2
B 3.1
(-1.3)
A 		7.3
(3)
A 		2
(-2.5)
A 		1.5
(-3)
A 		6
C 14.1
(3)
A 		9.3
(0.6)
A 		4
(-2)
A 		2
(-3)
A 		12
avr 6.7
(3) 		6.2
(2.4) 		3.2
(-1.2) 		1.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.1)
A 		1.3
(-2.4)
A 		6.3
(3)
A 		2.3
(-1.3)
A 		4.4
(1)
A 		0.7
(-3)
A 		6
B 3.3
(3)
A 		2.3
(-0)
A 		1.6
(-2.1)
A 		1.3
(-3)
A 		2.1
(-0.6)
A 		1.4
(-2.7)
A 		2
C 1.4
(-3)
A 		2.3
(2.4)
A 		1.7
(-1.2)
A 		2
(0.6)
A 		2.4
(3)
A 		1.6
(-1.8)
A 		1
avr 2.1
(-0.3) 		2
(-0.6) 		3.2
(3) 		1.9
(-0.9) 		3
(2.4) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20718
Sequence Type Exemplar sequence
Representative Public ID C66468 NCBI
Target Description C66468 /REP_DB=TREMBL Accession /GB=C66468 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk222b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062814 NCBI Caenorhabditis elegans H12I13.5 (H12I13.5) mRNA, complete cds. 11/11 None
H12I13.5 ENSEMBL cdna:known chromosome:CEL140:II:6077879:6078184:-1 gene:H12I13.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171008 9/11 Negative Strand Matching Probes None
SNAP00000034375 9/11 Negative Strand Matching Probes None
GENEFINDER00000034381 9/11 Negative Strand Matching Probes None
H12I13.6 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6077934-6078171(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H12I13.5
Entrez Gene 174014 Entrez gene
SwissProt Q9BLB7 EMBL-EBI
WormBase CE27183 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31536 Hypothetical protein H12I13.5 [Caenorhabditis elegans] ref|NP_495215.1| H12I13.5 [Caenorhabditis elegans] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:174063_AT
ctctcgttgacgccaggtagagttggcgtcgtcgttctccatgtaaaccattgatgttgg
aattgtggggcgagcctccacgcctggcggtggtcttctcggtgcgaacatcatcgaccc
accaatctcctcttcgactgaaaacacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCGTTGACGCCAGGTAGAGTTG 211 229 13 Antisense
CCAGGTAGAGTTGGCGTCGTCGTTC 572 261 25 Antisense
TCGTCGTTCTCCATGTAAACCATTG 613 599 41 Antisense
GTCGTTCTCCATGTAAACCATTGAT 513 473 43 Antisense
GTTCTCCATGTAAACCATTGATGTT 200 443 46 Antisense
TTGATGTTGGAATTGTGGGGCGAGC 688 675 63 Antisense
TTGGAATTGTGGGGCGAGCCTCCAC 628 703 69 Antisense
GTCTTCTCGGTGCGAACATCATCGA 153 469 105 Antisense
TTCTCGGTGCGAACATCATCGACCC 24 691 108 Antisense
CCAATCTCCTCTTCGACTGAAAACA 353 275 134 Antisense
ATCTCCTCTTCGACTGAAAACACAG 655 33 137 Antisense
Sequence Source Affymetrix Proprietary Database