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[174062_s_at]

Description C48527 /REP_DB=TREMBL Accession /GB=C48527 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk457f3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 38      6grp_total > 64      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2108
1 2 3 4 range
A 4923.5
(3)
P 		4007.2
(-0.5)
P 		4155.3
(0)
P 		3366.1
(-3)
P 		1557
B 4978
(3)
P 		3930.9
(-0.5)
P 		4431
(1.1)
P 		3206.3
(-3)
P 		1772
C 4903.7
(3)
P 		3781.7
(-0.3)
P 		3978.7
(0.3)
P 		2869.9
(-3)
P 		2034
avr 4935.1
(3) 		3906.6
(-0.5) 		4188.3
(0.5) 		3147.4
(-3) 		1788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3673
1 2 3 4 5 6 range
A 5339.9
(-0.5)
P 		4653.4
(-3)
P 		6037.6
(2)
P 		5330.7
(-0.6)
P 		6313.5
(3)
P 		5495
(0)
P 		1660
B 5464.9
(-2.2)
P 		5017
(-3)
P 		8326.6
(3)
P 		5895.4
(-1.4)
P 		5914.8
(-1.4)
P 		6033.6
(-1.2)
P 		3310
C 5548.2
(-1.6)
P 		5057.9
(-3)
P 		5391.4
(-2.1)
P 		5966.5
(-0.4)
P 		6199.8
(0.2)
P 		7171.2
(3)
P 		2113
avr 5451
(-1.1) 		4909.4
(-3) 		6585.2
(3) 		5730.9
(-0.1) 		6142.7
(1.4) 		6233.3
(1.7) 		1676
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1309
1 2 3 4 range
A 1792.6
(3)
P 		869.8
(-1.3)
P 		1086.3
(-0.3)
P 		492.7
(-3)
P 		1300
B 1587.4
(3)
P 		970.9
(-1.1)
P 		1026.8
(-0.7)
P 		683.3
(-3)
P 		904
C 1623.3
(3)
P 		1087.3
(0.2)
P 		1386.7
(1.8)
P 		483.9
(-3)
P 		1139
avr 1667.8
(3) 		976
(-0.7) 		1166.6
(0.3) 		553.3
(-3) 		1115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1419
1 2 3 4 5 6 range
A 984.4
(-3)
P 		1655
(1.4)
P 		1314.9
(-0.8)
P 		1352
(-0.6)
P 		1905.1
(3)
P 		1337.9
(-0.7)
P 		921
B 1901.5
(-0.6)
P 		1669.9
(-2.2)
P 		2021.9
(0.3)
P 		1561.5
(-3)
P 		2403.1
(3)
P 		2249.9
(1.9)
P 		842
C 2056.5
(1.3)
P 		1543.3
(-1.3)
P 		1372.2
(-2.1)
P 		1199.9
(-3)
P 		2006.2
(1)
P 		2400.6
(3)
P 		1201
avr 1647.5
(-0.7) 		1622.7
(-0.9) 		1569.7
(-1.4) 		1371.1
(-3) 		2104.8
(3) 		1996.1
(2.1) 		734
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20887
Sequence Type Exemplar sequence
Representative Public ID C48527 NCBI
Target Description C48527 /REP_DB=TREMBL Accession /GB=C48527 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk457f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066779 NCBI Caenorhabditis elegans ZK632.9 (ZK632.9) mRNA, complete cds. 11/11 B 
ZK632.9.1 ENSEMBL cdna:known chromosome:CEL140:III:9824767:9825339:-1 gene:ZK632.9 10/11 None
ZK632.9.2 ENSEMBL cdna:known chromosome:CEL140:III:9824767:9825326:-1 gene:ZK632.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031483 6/11 Cross Hyb Matching Probes None
SNAP00000031480 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9824838-9825185(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.9
Entrez Gene 176394 Entrez gene
SwissProt P34654 EMBL-EBI
WormBase CE28193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80189 Hypothetical protein ZK632.9 [Caenorhabditis elegans] ref|NP_499180.1| ZK632.9 [Caenorhabditis elegans] sp|P34654|YOT9_CAEEL Hypothetical protein ZK632.9 in chromosome III 3.0E-28
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 3.0E-28
blast CAE65118 Hypothetical protein CBG09983 [Caenorhabditis briggsae] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:174062_S_AT
gaaagcgcaccaagtctgacagagtggagcacaagcacgcatctcagccaggaggggaca
ctcgcaaggttgttcaaaccgccagcaacggagaggcaaagagaaaagagaagtgaatca
ttcttcatgtgactgcccgacactatttctctattccaccaccgactgcccactgattca
tgttttttaccttgtttctcgtttcttcattatttttaaccgtattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCGCACCAAGTCTGACAGAGT 476 359 13 Antisense
GAGTGGAGCACAAGCACGCATCTCA 526 401 34 Antisense
GCATCTCAGCCAGGAGGGGACACTC 254 307 51 Antisense
GGAGGGGACACTCGCAAGGTTGTTC 435 511 63 Antisense
GCAAGGTTGTTCAAACCGCCAGCAA 469 321 76 Antisense
CAAACCGCCAGCAACGGAGAGGCAA 411 191 87 Antisense
GAATCATTCTTCATGTGACTGCCCG 2 329 127 Antisense
TTCATGTGACTGCCCGACACTATTT 158 689 136 Antisense
GACTGCCCACTGATTCATGTTTTTT 586 373 176 Antisense
TCATGTTTTTTACCTTGTTTCTCGT 224 623 190 Antisense
TTCTTCATTATTTTTAACCGTATTG 244 691 215 Antisense
Sequence Source Affymetrix Proprietary Database