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[174061_s_at]

Description C70904 /REP_DB=TREMBL Accession /GB=C70904 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437d6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 37      6grp_total > 51      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4624
1 2 3 4 range
A 3796
(-2.5)
P 		7336.7
(3)
P 		6805.1
(2.2)
P 		3441.8
(-3)
P 		3895
B 3691.1
(-2.3)
P 		6548.6
(2.3)
P 		6973.7
(3)
P 		3240
(-3)
P 		3734
C 3817.7
(-1.3)
P 		6624.2
(3)
P 		6409.9
(2.7)
P 		2713
(-3)
P 		3911
avr 3768.3
(-2) 		6836.5
(3) 		6729.6
(2.8) 		3131.6
(-3) 		3705

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2818
1 2 3 4 5 6 range
A 5499.7
(1.4)
P 		5172
(0.7)
P 		5968.8
(2.4)
P 		6237.8
(3)
P 		4712.1
(-0.3)
P 		3470.2
(-3)
P 		2768
B 4900.9
(1.4)
P 		4264.6
(-0.5)
P 		5158.5
(2.1)
P 		5450.4
(3)
P 		4708.6
(0.8)
P 		3420.2
(-3)
P 		2030
C 5099.7
(1.2)
P 		4567.9
(-0.4)
P 		5616
(2.7)
P 		5715.4
(3)
P 		4661.1
(-0.1)
P 		3666.3
(-3)
P 		2049
avr 5166.8
(1.3) 		4668.2
(0) 		5581.1
(2.4) 		5801.2
(3) 		4693.9
(0.1) 		3518.9
(-3) 		2282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1777
1 2 3 4 range
A 1382.1
(1.1)
P 		1592.6
(2.1)
P 		1779
(3)
P 		503.8
(-3)
P 		1275
B 1177.1
(0.2)
P 		1617.4
(3)
P 		1616
(3)
P 		690.4
(-3)
P 		927
C 1263.8
(-0.3)
P 		1904.5
(1.9)
P 		2234
(3)
P 		457.5
(-3)
P 		1777
avr 1274.3
(0.3) 		1704.8
(2.2) 		1876.3
(3) 		550.6
(-3) 		1326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1068
1 2 3 4 5 6 range
A 1013.8
(-2)
P 		1839.4
(3)
P 		1299.9
(-0.3)
P 		1582
(1.4)
P 		1421.9
(0.5)
P 		844.9
(-3)
P 		995
B 1705.3
(1.1)
P 		1419.5
(-1.5)
P 		1252.6
(-3)
P 		1443.6
(-1.3)
P 		1913
(3)
P 		1275.4
(-2.8)
P 		660
C 1890.2
(3)
P 		1393.8
(-1)
P 		1429.4
(-0.7)
P 		1149.4
(-3)
P 		1508.3
(-0.1)
P 		1227.3
(-2.4)
P 		741
avr 1536.4
(2.1) 		1550.9
(2.2) 		1327.3
(-0.5) 		1391.7
(0.3) 		1614.4
(3) 		1115.9
(-3) 		499
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174061_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20283
Sequence Type Exemplar sequence
Representative Public ID C70904 NCBI
Target Description C70904 /REP_DB=TREMBL Accession /GB=C70904 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437d6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059573 NCBI Caenorhabditis elegans C48B6.10 (C48B6.10) mRNA, complete cds. 11/11 None
SNAP00000029809 ENSEMBL cdna:SNAP chromosome:CEL140:I:6931371:6931802:-1 11/11 None
GENEFINDER00000029813 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6931371:6931802:-1 11/11 None
C48B6.10 ENSEMBL cdna:known chromosome:CEL140:I:6931208:6931937:-1 gene:C48B6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6931226-6931741(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B6.10
Entrez Gene 172421 Entrez gene
SwissProt Q95ZM3 EMBL-EBI
WormBase CE27868 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491974.1 1 18-35
C48B6.10 1 18-35
SNAP00000029809 1 18-35
GENEFINDER00000029813 1 18-35
Sequence
Target Sequence 
>C. ELEGANS:174061_S_AT
aggaaaagggccatactcgacatcgttcgataactctgtcttcatcatccccgcaatcgt
tattgtagccgttttcgcctacgccgttatcaagctccgtgacaccactttggctaagga
taacaaaagcacggctcgtcaacgccgtgaggagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAAAGGGCCATACTCGACATCG 354 53 35 Antisense
GGCCATACTCGACATCGTTCGATAA 48 545 43 Antisense
ACATCGTTCGATAACTCTGTCTTCA 241 107 54 Antisense
TTCGATAACTCTGTCTTCATCATCC 259 695 60 Antisense
CATCATCCCCGCAATCGTTATTGTA 410 213 77 Antisense
GCAATCGTTATTGTAGCCGTTTTCG 253 323 87 Antisense
TTATCAAGCTCCGTGACACCACTTT 58 681 121 Antisense
TCCGTGACACCACTTTGGCTAAGGA 129 595 130 Antisense
GACACCACTTTGGCTAAGGATAACA 93 367 135 Antisense
AACAAAAGCACGGCTCGTCAACGCC 17 135 156 Antisense
GGCTCGTCAACGCCGTGAGGAGAAG 80 539 167 Antisense
Sequence Source Affymetrix Proprietary Database