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[174060_at]

Description C70547 /REP_DB=TREMBL Accession /GB=C70547 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk410a8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 22      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 31      6grp_total > 22      4grp_total > 30      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 989
1 2 3 4 range
A 1291.8
(3)
P 		722.2
(-1.1)
P 		453.9
(-3)
P 		904.2
(0.2)
P 		838
B 1096.6
(3)
P 		551.6
(-1.3)
P 		344
(-3)
P 		752.8
(0.3)
P 		753
C 1332.5
(3)
P 		648.7
(-1.4)
P 		395.6
(-3)
P 		894.7
(0.2)
P 		937
avr 1240.3
(3) 		640.8
(-1.3) 		397.8
(-3) 		850.6
(0.2) 		843

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 840.8
(0)
P 		1115.3
(2.7)
P 		1144.6
(3)
P 		1073.6
(2.3)
P 		542.5
(-2.8)
P 		526.8
(-3)
P 		618
B 920
(0.9)
P 		1059.7
(3)
P 		1029.4
(2.5)
P 		780.9
(-1.2)
P 		804.5
(-0.8)
P 		661.7
(-3)
P 		398
C 1322.8
(3)
P 		1091.6
(0.8)
P 		1036.9
(0.3)
P 		756
(-2.4)
P 		908.1
(-1)
P 		696.5
(-3)
P 		626
avr 1027.9
(2.2) 		1088.9
(3) 		1070.3
(2.8) 		870.2
(0.2) 		751.7
(-1.4) 		628.3
(-3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 470.3
(3)
P 		156.8
(-2.3)
P 		118.7
(-3)
P 		132.4
(-2.8)
P 		352
B 349.7
(3)
P 		136.2
(-1.7)
P 		79.7
(-3)
P 		160.4
(-1.2)
P 		270
C 441.1
(3)
P 		186.5
(-2)
P 		137.9
(-3)
P 		150.9
(-2.7)
P 		303
avr 420.4
(3) 		159.8
(-2.1) 		112.1
(-3) 		147.9
(-2.3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 155
(-2.4)
P 		396.6
(3)
P 		249.3
(-0.3)
P 		272.3
(0.2)
P 		163.7
(-2.2)
P 		128.3
(-3)
P 		268
B 320.1
(1.7)
P 		352.7
(3)
P 		250
(-1.2)
P 		206.8
(-3)
P 		326.9
(1.9)
P 		246.7
(-1.4)
P 		146
C 490.3
(3)
P 		333.1
(0.2)
P 		263.9
(-1)
P 		152
(-3)
P 		293.8
(-0.5)
P 		233.2
(-1.6)
P 		338
avr 321.8
(1.5) 		360.8
(3) 		254.4
(-1) 		210.4
(-2.7) 		261.5
(-0.8) 		202.7
(-3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22469
Sequence Type Exemplar sequence
Representative Public ID C70547 NCBI
Target Description C70547 /REP_DB=TREMBL Accession /GB=C70547 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk410a8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075685 NCBI Caenorhabditis elegans M02E1.2 (M02E1.2) mRNA, complete cds. 11/11 None
M02E1.2 ENSEMBL cdna:known chromosome:CEL140:X:308771:311275:-1 gene:M02E1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:308837-311264(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02E1.2
Entrez Gene 180387 Entrez gene
SwissProt Q95Q46 EMBL-EBI
WormBase CE28616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77619 Hypothetical protein M02E1.2 [Caenorhabditis elegans] ref|NP_508086.1| M02E1.2 [Caenorhabditis elegans] 3.0E-42
blast CAE63675 Hypothetical protein CBG08177 [Caenorhabditis briggsae] 6.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508086.1 1 7-29
M02E1.2 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:174060_AT
attgctgttatgttggtttgctccattttgcagccaatgcttgcactgggatccctgact
ccgtctgccgcattcagagcaaacatgcaacagcgagaacgctcgccgaacaccttgttt
tatatggatggcgcttcgaaacaatatggcgacgagattaaggacccaatctacaaacgt
ttcaagccttgttactactcaccaattcaatgtctcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTGTTATGTTGGTTTGCTCCA 281 7 38 Antisense
TGGTTTGCTCCATTTTGCAGCCAAT 548 551 51 Antisense
GCAGCCAATGCTTGCACTGGGATCC 123 315 67 Antisense
TCCGTCTGCCGCATTCAGAGCAAAC 165 595 97 Antisense
GCAACAGCGAGAACGCTCGCCGAAC 341 319 124 Antisense
CTCGCCGAACACCTTGTTTTATATG 465 233 139 Antisense
GGATGGCGCTTCGAAACAATATGGC 331 515 163 Antisense
ATGGCGACGAGATTAAGGACCCAAT 319 51 183 Antisense
CAATCTACAAACGTTTCAAGCCTTG 698 179 204 Antisense
TTTCAAGCCTTGTTACTACTCACCA 642 669 217 Antisense
CTACTCACCAATTCAATGTCTCATC 167 227 232 Antisense
Sequence Source Affymetrix Proprietary Database