[Home] | [Total List]

[174059_at]

Description C69955 /REP_DB=TREMBL Accession /GB=C69955 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370c8 : 5prime end, single read.
Cluster 6grp_total > 93      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 9.7
(-3)
A 		16.2
(3)
A 		11.8
(-1.1)
A 		14.7
(1.6)
A 		7
B 25
(1.9)
A 		11
(-2.6)
A 		9.8
(-3)
A 		28.4
(3)
A 		19
C 13.2
(-2.7)
A 		12.6
(-2.7)
A 		9.3
(-3)
A 		78.9
(3)
A 		70
avr 16
(-1.9) 		13.3
(-2.4) 		10.3
(-3) 		40.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 33.1
(2.8)
A 		7.5
(-2.3)
A 		10.7
(-1.7)
A 		4.1
(-3)
A 		34.1
(3)
A 		6.6
(-2.5)
A 		30
B 9.4
(-2)
A 		13.2
(-1.2)
A 		4.6
(-3)
A 		14.2
(-1)
A 		33.1
(3)
A 		12.6
(-1.3)
A 		29
C 9.3
(-2.2)
A 		11.8
(-0.4)
A 		13.1
(0.6)
A 		12.6
(0.2)
A 		8.2
(-3)
A 		16.4
(3)
A 		8
avr 17.3
(0) 		10.8
(-2.5) 		9.5
(-3) 		10.3
(-2.7) 		25.1
(3) 		11.9
(-2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.5
(3)
A 		3.5
(3)
A 		3.1
(1.2)
A 		2.2
(-3)
A 		1
B 8
(3)
A 		2.7
(-2.6)
A 		2.3
(-3)
A 		6
(0.9)
A 		6
C 4.4
(-2.3)
A 		3.6
(-2.8)
A 		3.2
(-3)
A 		13.3
(3)
A 		10
avr 5.3
(0.3) 		3.3
(-2.4) 		2.9
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.1
(0.3)
A 		2.7
(-1.9)
A 		2.3
(-2.2)
A 		1
(-3)
A 		10.3
(3)
A 		1.6
(-2.6)
A 		9
B 3.3
(-1.9)
A 		4.4
(-1.4)
A 		1.1
(-3)
A 		3.8
(-1.7)
A 		13.4
(3)
A 		4.7
(-1.2)
A 		12
C 3.4
(-1.2)
A 		3.6
(-0.8)
A 		3.3
(-1.4)
A 		2.5
(-3)
A 		2.7
(-2.6)
A 		5.5
(3)
A 		3
avr 4.3
(-1.1) 		3.6
(-1.7) 		2.2
(-3) 		2.4
(-2.8) 		8.8
(3) 		3.9
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21323
Sequence Type Exemplar sequence
Representative Public ID C69955 NCBI
Target Description C69955 /REP_DB=TREMBL Accession /GB=C69955 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y11D7A.16 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:9247134:9248066:1 gene:Y11D7A.16 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9247655-9248238(+) 69.31 100.0
Public Domain and Genome References
Ensembl Y11D7A.16
Sequence
Target Sequence 
>C. ELEGANS:174059_AT
tgaaagaccaccggcttttggagcacctggagccgcaccaccagcagctggtttcgcacc
ttctttcttgtcgaaacaatcgtttccaattccagcaagtgtttggtagttgagatcgac
ctcccggttttggagcaccggcagcaggggaagctccaccagcagcatcaggagcttttc
ctttctcttggaatacgtttccatcaactccagcaagagtttgataatttggatcgtgtg
ttcctgcgacagccgcgaaaatatttgcatattatttggctgacccaatacataacgact
tgatctacaataaatgcgggaatttccccataaaaatgtgatgtcgcaagctcttaatcg
ggagacacaaattcaattatctgcttctcaattccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAGACCACCGGCTTTTGGAGCA 561 571 43 Antisense
ACCACCAGCAGCTGGTTTCGCACCT 475 85 79 Antisense
TTTCGCACCTTCTTTCTTGTCGAAA 35 671 94 Antisense
ACAATCGTTTCCAATTCCAGCAAGT 315 115 118 Antisense
TTGGTAGTTGAGATCGACCTCCCGG 627 703 145 Antisense
TTTGGAGCACCGGCAGCAGGGGAAG 561 665 171 Antisense
CATCAGGAGCTTTTCCTTTCTCTTG 453 213 208 Antisense
GGAATACGTTTCCATCAACTCCAGC 435 533 232 Antisense
ATTTGGATCGTGTGTTCCTGCGACA 698 17 269 Antisense
GTGATGTCGCAAGCTCTTAATCGGG 670 481 380 Antisense
CAATTATCTGCTTCTCAATTCCATA 239 181 416 Antisense
Sequence Source Affymetrix Proprietary Database