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[174058_s_at]

Description C68913 /REP_DB=TREMBL Accession /GB=C68913 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk310b7 : 5prime end, single read.
Cluster 6grp_total > 39      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 39.6
(-0.1)
A 		29.9
(-1.1)
A 		11.9
(-3)
A 		69.7
(3)
A 		58
B 42.1
(-1.1)
A 		33.3
(-3)
A 		60.6
(3)
A 		53.4
(1.4)
A 		27
C 44.4
(-0.1)
A 		6.6
(-3)
A 		8.5
(-2.9)
A 		84.2
(3)
P 		78
avr 42
(-0.6) 		23.3
(-3) 		27
(-2.5) 		69.1
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 54.6
(0.5)
A 		6.9
(-3)
A 		40.9
(-0.5)
A 		89.3
(3)
A 		47.3
(-0.1)
A 		56.1
(0.6)
A 		82
B 35.5
(0.3)
A 		34.5
(0.2)
A 		6.9
(-3)
A 		20.6
(-1.4)
A 		58.6
(3)
A 		50
(2)
A 		52
C 35
(0.6)
A 		54.9
(3)
A 		6.7
(-2.7)
A 		11.2
(-2.2)
A 		4.4
(-3)
A 		7.1
(-2.7)
A 		51
avr 41.7
(3) 		32.1
(0.5) 		18.2
(-3) 		40.4
(2.7) 		36.8
(1.7) 		37.7
(2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.4
(3)
A 		6.5
(-1.2)
A 		3.1
(-3)
A 		10.2
(0.8)
A 		11
B 13.4
(2.4)
A 		8.2
(-3)
A 		14
(3)
A 		11.4
(0.3)
A 		6
C 14.7
(3)
A 		1.9
(-3)
A 		3
(-2.5)
A 		14.2
(2.8)
P 		13
avr 14.2
(3) 		5.5
(-3) 		6.7
(-2.2) 		11.9
(1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.1
(-0.7)
A 		2.5
(-3)
A 		8.9
(-1.1)
A 		22.6
(3)
A 		14.3
(0.5)
A 		13.6
(0.3)
A 		20
B 12.3
(-0.1)
A 		11.5
(-0.3)
A 		1.7
(-3)
A 		5.5
(-2)
A 		23.8
(3)
A 		18.6
(1.6)
A 		22
C 13
(1.5)
A 		16.7
(3)
A 		1.7
(-2.9)
A 		2.2
(-2.7)
A 		1.4
(-3)
A 		2.4
(-2.6)
A 		15
avr 11.8
(2.1) 		10.2
(1) 		4.1
(-3) 		10.1
(1) 		13.2
(3) 		11.5
(1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174058_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20783
Sequence Type Exemplar sequence
Representative Public ID C68913 NCBI
Target Description C68913 /REP_DB=TREMBL Accession /GB=C68913 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk310b7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062149 NCBI Caenorhabditis elegans C16C8.19 (C16C8.19) mRNA, complete cds. 11/11 None
SNAP00000014785 ENSEMBL cdna:SNAP chromosome:CEL140:II:3458483:3460165:1 11/11 None
C16C8.19 ENSEMBL cdna:known chromosome:CEL140:II:3458496:3459018:1 gene:C16C8.19 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014798 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3458645-3458975(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.19
Entrez Gene 173691 Entrez gene
SwissProt Q95ZM7 EMBL-EBI
WormBase CE28205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68179 Hypothetical protein C16C8.19 [Caenorhabditis elegans] ref|NP_494550.1| C16C8.19 [Caenorhabditis elegans] 4.0E-72
blast AAK68179 Hypothetical protein C16C8.19 [Caenorhabditis elegans] ref|NP_494550.1| C16C8.19 [Caenorhabditis elegans] 7.0E-64
blast CAE70958 Hypothetical protein CBG17769 [Caenorhabditis briggsae] 1.0E-18
blast CAE70958 Hypothetical protein CBG17769 [Caenorhabditis briggsae] 6.0E-16
Sequence
Target Sequence 
>C. ELEGANS:174058_S_AT
aacccaactgctcaatacgttcatgagcgctgtgaacgcccaggactttaatcggcttag
ccaaatagtttctttgaatcgtgaggtgttgagcctgagtggcatgcgtcacttgtacga
tatatttgctggaaatacttggaaatacaggtcccatatgcatccgaatcccaacaaaat
cactgcgaccgtgattttcacagatccatctaccaaaatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCAACTGCTCAATACGTTCATG 94 145 13 Antisense
TCATGAGCGCTGTGAACGCCCAGGA 266 621 33 Antisense
GAACGCCCAGGACTTTAATCGGCTT 300 345 46 Antisense
ATCGGCTTAGCCAAATAGTTTCTTT 138 35 63 Antisense
GTTGAGCCTGAGTGGCATGCGTCAC 611 437 100 Antisense
GTGGCATGCGTCACTTGTACGATAT 3 491 111 Antisense
GAAATACAGGTCCCATATGCATCCG 126 363 154 Antisense
CATATGCATCCGAATCCCAACAAAA 572 213 167 Antisense
ATCCCAACAAAATCACTGCGACCGT 652 37 180 Antisense
TGCGACCGTGATTTTCACAGATCCA 376 583 196 Antisense
CACAGATCCATCTACCAAAATCAAT 242 195 211 Antisense
Sequence Source Affymetrix Proprietary Database