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[174057_s_at]

Description C67354 /REP_DB=TREMBL Accession /GB=C67354 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk276g2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 856
(3)
P 		559.9
(-3)
P 		580.2
(-2.6)
P 		831.3
(2.5)
P 		296
B 813.5
(1.3)
P 		534
(-2.1)
P 		463.1
(-3)
P 		957.3
(3)
P 		494
C 661.2
(-0)
P 		525.5
(-3)
P 		659.5
(-0)
P 		797.8
(3)
P 		272
avr 776.9
(1.4) 		539.8
(-3) 		567.6
(-2.5) 		862.1
(3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1032
1 2 3 4 5 6 range
A 1001.6
(1.7)
P 		708.1
(-0.3)
P 		325.8
(-3)
P 		455.8
(-2.1)
P 		1187.2
(3)
P 		1158.2
(2.8)
P 		861
B 838.2
(1.4)
P 		601.1
(-0.7)
P 		354.2
(-3)
P 		580.1
(-0.9)
P 		829.1
(1.3)
P 		1011.1
(3)
P 		657
C 1358.1
(3)
P 		644.8
(-1.2)
P 		441.3
(-2.4)
P 		347.3
(-3)
P 		1019.4
(1)
P 		738.8
(-0.7)
P 		1011
avr 1066
(3) 		651.3
(-0.6) 		373.8
(-3) 		461.1
(-2.2) 		1011.9
(2.5) 		969.4
(2.2) 		692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 311.7
(3)
P 		121.5
(-3)
P 		151.7
(-2)
P 		121.7
(-3)
P 		190
B 259.4
(3)
P 		131.9
(-2)
P 		107.3
(-3)
P 		204
(0.8)
P 		152
C 218.9
(2.3)
P 		151.1
(-2)
P 		229.9
(3)
P 		134.5
(-3)
P 		95
avr 263.3
(3) 		134.8
(-3) 		163
(-1.7) 		153.4
(-2.1) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 184.6
(-0.6)
P 		251.8
(0.8)
P 		71
(-3)
P 		115.6
(-2.1)
P 		358.3
(3)
P 		282
(1.4)
P 		287
B 291.7
(1.2)
P 		200.1
(-0.6)
P 		86
(-3)
P 		153.7
(-1.6)
P 		336.9
(2.2)
P 		377
(3)
P 		291
C 503.4
(3)
P 		196.7
(-1.2)
P 		112.3
(-2.4)
P 		69.8
(-3)
P 		329.9
(0.6)
P 		247.3
(-0.5)
P 		434
avr 326.6
(2.6) 		216.2
(0) 		89.8
(-3) 		113
(-2.4) 		341.7
(3) 		302.1
(2.1) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174057_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21984
Sequence Type Exemplar sequence
Representative Public ID C67354 NCBI
Target Description C67354 /REP_DB=TREMBL Accession /GB=C67354 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk276g2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171443 NCBI Caenorhabditis elegans W08A12.1c (W08A12.1) mRNA, complete cds. 11/11 None
W08A12.1c ENSEMBL cdna:known chromosome:CEL140:V:3690321:3701583:1 gene:W08A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178787 3 1 NM_171443 174057_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3701252-3701531(+) 85.66 100.0
Public Domain and Genome References
Ensembl W08A12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65798 Hypothetical protein W08A12.1c [Caenorhabditis elegans] ref|NP_741519.1| W08A12.1c [Caenorhabditis elegans] 0.0
blast AAK73903 Hypothetical protein W08A12.1b [Caenorhabditis elegans] ref|NP_504029.1| W08A12.1b [Caenorhabditis elegans] 0.0
blast AAL65797 Hypothetical protein W08A12.1a [Caenorhabditis elegans] ref|NP_504030.2| W08A12.1a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174057_S_AT
ctccaaaaaatccctcacggtgctttaatctttgttttactttttttcagtttttttatt
ttatttttttccacaaaactccccccatcccgatcccgccgccgataatatcacaaaaat
ctatgtgttcacttttccaattcgtcattcactttttttatagtttttaaaatcattttt
ctgtctttgttatctgtttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAAAAAATCCCTCACGGTGCTT 264 235 46 Antisense
AAATCCCTCACGGTGCTTTAATCTT 611 117 53 Antisense
CTCACGGTGCTTTAATCTTTGTTTT 135 229 59 Antisense
TCCCGCCGCCGATAATATCACAAAA 527 597 139 Antisense
AAAAATCTATGTGTTCACTTTTCCA 293 129 160 Antisense
TGTGTTCACTTTTCCAATTCGTCAT 347 555 169 Antisense
TTCACTTTTCCAATTCGTCATTCAC 462 685 173 Antisense
TCCAATTCGTCATTCACTTTTTTTA 285 587 181 Antisense
TCGTCATTCACTTTTTTTATAGTTT 204 605 187 Antisense
AATCATTTTTCTGTCTTTGTTATCT 299 171 216 Antisense
TTTCTGTCTTTGTTATCTGTTTTTT 496 671 223 Antisense
Sequence Source Affymetrix Proprietary Database