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[174056_at]

Description C65078 /REP_DB=TREMBL Accession /GB=C65078 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk398g5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 08      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 46      6grp_total > 09      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1869
1 2 3 4 range
A 3379.7
(3)
P 		1945.6
(-3)
P 		2154.7
(-2.1)
P 		2819.6
(0.7)
P 		1434
B 3450.6
(2.7)
P 		2563.7
(-0.7)
P 		1949.6
(-3)
P 		3535.6
(3)
P 		1586
C 3814.1
(3)
P 		2320.6
(-2.7)
P 		2242.4
(-3)
P 		2543.9
(-1.8)
P 		1572
avr 3548.1
(3) 		2276.6
(-2.3) 		2115.6
(-3) 		2966.4
(0.6) 		1433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2507
1 2 3 4 5 6 range
A 4667.3
(3)
P 		2854.2
(-1.3)
P 		2160.8
(-3)
P 		2763.9
(-1.6)
P 		3095.1
(-0.8)
P 		2784
(-1.5)
P 		2507
B 3521.9
(3)
P 		2509.1
(-1.7)
P 		2506
(-1.7)
P 		3436.4
(2.6)
P 		2224.2
(-3)
P 		2532
(-1.6)
P 		1298
C 3429.6
(1.2)
P 		2561.2
(-2.7)
P 		2635.1
(-2.4)
P 		3840.1
(3)
P 		2492.7
(-3)
P 		3001.1
(-0.7)
P 		1347
avr 3872.9
(3) 		2641.5
(-2.1) 		2434
(-3) 		3346.8
(0.8) 		2604
(-2.3) 		2772.4
(-1.6) 		1439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 850
1 2 3 4 range
A 1230.5
(3)
P 		422.3
(-2.9)
P 		563.3
(-1.9)
P 		412.7
(-3)
P 		818
B 1100.4
(3)
P 		633.2
(-1.3)
P 		451.8
(-3)
P 		753.4
(-0.2)
P 		649
C 1262.6
(3)
P 		667.2
(-1.3)
P 		781.5
(-0.5)
P 		428.9
(-3)
P 		834
avr 1197.8
(3) 		574.2
(-2.6) 		598.9
(-2.4) 		531.7
(-3) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 860.4
(1.3)
P 		1015.1
(3)
P 		470.6
(-3)
P 		701
(-0.5)
P 		934
(2.1)
P 		677.8
(-0.7)
P 		545
B 1225.5
(3)
P 		835.2
(-0.8)
P 		608.5
(-3)
P 		910.2
(-0.1)
P 		903.7
(-0.1)
P 		944.2
(0.3)
P 		617
C 1271.2
(3)
P 		781.5
(-1.9)
P 		670.7
(-3)
P 		772.2
(-2)
P 		806.6
(-1.6)
P 		1004.7
(0.3)
P 		601
avr 1119
(3) 		877.3
(0.3) 		583.3
(-3) 		794.5
(-0.6) 		881.4
(0.3) 		875.6
(0.3) 		536
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21308
Sequence Type Exemplar sequence
Representative Public ID C65078 NCBI
Target Description C65078 /REP_DB=TREMBL Accession /GB=C65078 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk398g5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069718 NCBI Caenorhabditis elegans F54D1.6 (F54D1.6) mRNA, complete cds. 11/11 None
F54D1.6 ENSEMBL cdna:known chromosome:CEL140:IV:11287782:11294884:1 gene:F54D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11294349-11294620(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D1.6
Entrez Gene 178037 Entrez gene
SwissProt Q20762 EMBL-EBI
WormBase CE37523 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7160 cell-matrix adhesion inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00863 Hypothetical protein F54D1.6 [Caenorhabditis elegans] ref|NP_502119.2| F54D1.6 [Caenorhabditis elegans] sp|Q20762|YAO6_CAEEL Hypothetical protein F54D1.6 precursor 0.0
blast CAE62038 Hypothetical protein CBG06054 [Caenorhabditis briggsae] 0.0
blast CAE60721 Hypothetical protein CBG04396 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010362 EMBL-EBI Nid 3.9E-36
Pfam IPR005533 EMBL-EBI AMOP domain 5.0E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502119.2 1 1319-1341
F54D1.6 1 1319-1341
Sequence
Target Sequence 
>C. ELEGANS:174056_AT
acaaaaatggtctcattctctcttcaaatcctttcattctgccaattttcgaatcgaaaa
cctgcaaacatcctctatttttctgtgatttttcttttgcctggaaaggtgcgtatttat
tttaagtatatgtttgaattgtgaatatacccccatgactgatgatgattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAAATGGTCTCATTCTCTCTTC 702 111 79 Antisense
AAAATGGTCTCATTCTCTCTTCAAA 511 133 82 Antisense
AAATCCTTTCATTCTGCCAATTTTC 694 117 104 Antisense
TCGAAAACCTGCAAACATCCTCTAT 580 601 132 Antisense
ACCTGCAAACATCCTCTATTTTTCT 39 89 138 Antisense
AAACATCCTCTATTTTTCTGTGATT 211 129 144 Antisense
TTTCTTTTGCCTGGAAAGGTGCGTA 242 671 169 Antisense
AGGTGCGTATTTATTTTAAGTATAT 474 49 185 Antisense
GAATTGTGAATATACCCCCATGACT 583 323 214 Antisense
GAATATACCCCCATGACTGATGATG 106 327 221 Antisense
ACCCCCATGACTGATGATGATTTTT 653 89 227 Antisense
Sequence Source Affymetrix Proprietary Database