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[174055_s_at] GTP-binding protein

Description C67577 /REP_DB=TREMBL Accession /GB=C67577 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261c6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 66      6grp_total > 46      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5684
1 2 3 4 range
A 1861.5
(-2.1)
P 		1044.7
(-3)
P 		1173
(-2.9)
P 		6454.9
(3)
P 		5410
B 1601.8
(-2.5)
P 		1166.1
(-3)
P 		1139.3
(-3)
P 		6484.9
(3)
P 		5346
C 2055.7
(-1.6)
P 		800.5
(-3)
P 		1178.2
(-2.6)
P 		6019.3
(3)
P 		5219
avr 1839.7
(-2.1) 		1003.8
(-3) 		1163.5
(-2.8) 		6319.7
(3) 		5316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 1251
(-1.6)
P 		1320
(-0.7)
P 		1634.5
(3)
P 		1135.7
(-2.9)
P 		1130.3
(-3)
P 		1224.6
(-1.9)
P 		504
B 1534.7
(2.9)
P 		1496.8
(2.3)
P 		1437.8
(1.2)
P 		1538.9
(3)
P 		1200.5
(-3)
P 		1464
(1.7)
P 		338
C 1362.9
(0.2)
P 		1576.3
(3)
P 		1123.9
(-3)
P 		1539.6
(2.5)
P 		1136.2
(-2.8)
P 		1547.2
(2.6)
P 		452
avr 1382.9
(1.4) 		1464.4
(3) 		1398.7
(1.7) 		1404.7
(1.8) 		1155.7
(-3) 		1411.9
(2) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1155
1 2 3 4 range
A 677.8
(0.8)
P 		226.8
(-3)
P 		306.7
(-2.3)
P 		944.9
(3)
P 		718
B 510.8
(-1.7)
P 		288
(-2.9)
P 		264
(-3)
P 		1381.9
(3)
P 		1118
C 680.5
(0.4)
P 		230.2
(-3)
P 		410.6
(-1.6)
P 		1015
(3)
P 		785
avr 623
(-0.4) 		248.3
(-3) 		327.1
(-2.5) 		1113.9
(3) 		866

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 230.6
(-3)
P 		469.5
(3)
P 		356
(0.1)
P 		288
(-1.6)
P 		341.1
(-0.2)
P 		298.2
(-1.3)
P 		239
B 534
(2.6)
P 		498.2
(1.5)
P 		349.1
(-3)
P 		407.6
(-1.2)
P 		487.8
(1.2)
P 		545.9
(3)
P 		197
C 505.2
(2.7)
P 		481
(2)
P 		286.1
(-3)
P 		309.6
(-2.4)
P 		367.7
(-0.9)
P 		517.9
(3)
P 		232
avr 423.3
(0.7) 		482.9
(3) 		330.4
(-3) 		335.1
(-2.8) 		398.9
(-0.3) 		454
(1.9) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174055_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21102
Sequence Type Exemplar sequence
Representative Public ID C67577 NCBI
Target Description C67577 /REP_DB=TREMBL Accession /GB=C67577 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261c6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066407 NCBI Caenorhabditis elegans C02F5.3 (C02F5.3) mRNA, complete cds. 11/11 A 
SNAP00000031511 ENSEMBL cdna:SNAP chromosome:CEL140:III:8245807:8248569:1 11/11 None
GENEFINDER00000031523 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8245807:8247053:1 11/11 None
C02F5.3 ENSEMBL cdna:known chromosome:CEL140:III:8245807:8247164:1 gene:C02F5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8246725-8247096(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Ensembl C02F5.3
Entrez Gene 176163 Entrez gene
SwissProt P34280 EMBL-EBI
WormBase CE36094 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261036_AT developmentally regulated GTP-binding protein (DRG1) at
ATGENOME1:15579_S_AT developmentally regulated GTP-binding protein (DRG1) at
CANINE:1584193_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
CANINE_2:CFA.5617.1.A1_S_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
CANINE_2:CFAAFFX.28127.1.S1_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
CANINE_2:CFAAFFX.28129.1.S1_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
CANINE_2:CFAAFFX.28132.1.S1_S_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
CANINE_2:CFAAFFX.28143.1.S1_S_AT similar to Developmentally regulated GTP-binding protein 2 (DRG 2) cfa
DROSOPHILA_2:1638796_AT dm
DROSGENOME1:150210_AT dm
CHICKEN:GGA.5329.1.S1_S_AT developmentally regulated GTP binding protein 2 gga
HG-U133A:203268_S_AT developmentally regulated GTP binding protein 2 hs
HG-U133_PLUS_2:203268_S_AT developmentally regulated GTP binding protein 2 hs
HG-U133A_2:203268_S_AT developmentally regulated GTP binding protein 2 hs
HUGENEFL:X80754_AT developmentally regulated GTP binding protein 2 hs
U133_X3P:G4557536_3P_A_AT developmentally regulated GTP binding protein 2 hs
U133_X3P:HS.78582.0.S1_3P_A_AT developmentally regulated GTP binding protein 2 hs
HG-U133A_2:203267_S_AT developmentally regulated GTP binding protein 2 hs
HG-FOCUS:203267_S_AT developmentally regulated GTP binding protein 2 hs
HG-U133_PLUS_2:203267_S_AT developmentally regulated GTP binding protein 2 hs
HG-U133A:203267_S_AT developmentally regulated GTP binding protein 2 hs
HG-U95AV2:37664_AT developmentally regulated GTP binding protein 2 hs
MG-U74BV2:113543_AT developmentally regulated GTP binding protein 2 mm
MOE430A:1417692_AT developmentally regulated GTP binding protein 2 mm
MOUSE430A_2:1417692_AT developmentally regulated GTP binding protein 2 mm
MOUSE430_2:1417692_AT developmentally regulated GTP binding protein 2 mm
MU19KSUBA:TC24919_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
MU19KSUBA:TC24919_G_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
MU19KSUBB:TC27907_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
MU19KSUBB:TC27907_G_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
MU19KSUBB:TC33372_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
MU19KSUBB:TC33372_G_AT Developmentally regulated GTP binding protein 2 (Drg2), mRNA mm
YEAST_2:1780244_AT Protein with similarity to mammalian developmentally regulated GTP-binding protein Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR25659 Hypothetical protein C02F5.3 [Caenorhabditis elegans] ref|NP_498808.2| C02F5.3 [Caenorhabditis elegans] sp|P34280|YKK3_CAEEL Hypothetical GTP-binding protein C02F5.3 in chromosome III 0.0
blast CAE56931 Hypothetical protein CBG24776 [Caenorhabditis briggsae] 0.0
blast XP_788099 PREDICTED: similar to developmentally regulated GTP binding protein 2 [Strongylocentrotus purpuratus] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR004095 EMBL-EBI TGS domain 1.3E-30
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 1.0E-126
Pfam IPR004095 EMBL-EBI TGS domain 6.3E-28
Pfam IPR007829 EMBL-EBI TM2 3.8E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031511 2 475-497,518-537
Sequence
Target Sequence 
>C. ELEGANS:174055_S_AT
gagagtctacacgaagaaacctggaaacgcaccagatcttggacccgaagacggtatcat
tctccgtggtggagccactatcgaacattgttgccacgcccttcatcgttcaattgctgc
tcaactccggtatgccatcgtctggggaacatcgacgaaattctctccgcaacgtgtcgg
tcttcatcataaactcgaccatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTCTACACGAAGAAACCTGGA 88 395 21 Antisense
TGGAAACGCACCAGATCTTGGACCC 706 545 42 Antisense
GGACCCGAAGACGGTATCATTCTCC 265 523 61 Antisense
ATCATTCTCCGTGGTGGAGCCACTA 116 29 76 Antisense
GGAGCCACTATCGAACATTGTTGCC 29 523 91 Antisense
ACTATCGAACATTGTTGCCACGCCC 9 103 97 Antisense
CCTTCATCGTTCAATTGCTGCTCAA 638 269 120 Antisense
GGTATGCCATCGTCTGGGGAACATC 347 505 149 Antisense
GAACATCGACGAAATTCTCTCCGCA 701 349 167 Antisense
CAACGTGTCGGTCTTCATCATAAAC 38 181 190 Antisense
GTCTTCATCATAAACTCGACCATGA 402 469 200 Antisense
Sequence Source Affymetrix Proprietary Database