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[174054_at]

Description C48936 /REP_DB=TREMBL Accession /GB=C48936 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk451a6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 70      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 363.6
(3)
P 		252.1
(-3)
P 		293.2
(-0.8)
P 		264.8
(-2.3)
P 		112
B 315.7
(-1.6)
P 		227.4
(-3)
P 		288.2
(-2)
P 		602.1
(3)
P 		375
C 370
(-2.7)
P 		406.4
(-0.1)
P 		365.1
(-3)
P 		451.7
(3)
P 		87
avr 349.8
(-0.7) 		295.3
(-3) 		315.5
(-2.2) 		439.5
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 349.6
(3)
P 		304.5
(2)
P 		165.5
(-1)
P 		73.9
(-3)
P 		233.9
(0.5)
P 		256.5
(1)
P 		276
B 448.7
(3)
P 		371.3
(1.4)
P 		240.2
(-1.4)
P 		210.4
(-2.1)
P 		167.1
(-3)
P 		406.6
(2.1)
P 		282
C 438.5
(3)
P 		298.7
(0.3)
P 		136.7
(-2.8)
P 		123.7
(-3)
P 		209.2
(-1.4)
P 		293.8
(0.2)
P 		315
avr 412.3
(3) 		324.8
(1.1) 		180.8
(-2) 		136
(-3) 		203.4
(-1.5) 		319
(1) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 132.4
(3)
P 		54.7
(-2)
P 		76.6
(-0.6)
P 		38.8
(-3)
P 		94
B 100.7
(0.7)
P 		56.2
(-3)
P 		66.8
(-2.1)
P 		128.3
(3)
P 		72
C 122.5
(2.4)
P 		116.9
(1.8)
P 		127.3
(3)
P 		76.2
(-3)
P 		51
avr 118.5
(3) 		75.9
(-3) 		90.2
(-1) 		81.1
(-2.3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 64.4
(0.1)
P 		108.3
(3)
P 		36
(-1.8)
P 		18.7
(-3)
P 		70.6
(0.5)
P 		62.5
(-0.1)
P 		90
B 156.1
(3)
P 		123.6
(1.1)
P 		58.3
(-2.8)
P 		55.7
(-3)
P 		67.9
(-2.3)
P 		151.6
(2.7)
P 		100
C 162.5
(3)
P 		91.2
(-0.1)
P 		34.8
(-2.6)
P 		24.9
(-3)
P 		67.7
(-1.1)
P 		98.4
(0.2)
P 		138
avr 127.7
(3) 		107.7
(1.7) 		43
(-2.4) 		33.1
(-3) 		68.7
(-0.7) 		104.2
(1.5) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20944
Sequence Type Exemplar sequence
Representative Public ID C48936 NCBI
Target Description C48936 /REP_DB=TREMBL Accession /GB=C48936 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk451a6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065833 NCBI Caenorhabditis elegans B0336.3 (B0336.3) mRNA, complete cds. 11/11 None
B0336.3 ENSEMBL cdna:known chromosome:CEL140:III:5711497:5714736:1 gene:B0336.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5714236-5714725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0336.3
Entrez Gene 175800 Entrez gene
SwissProt Q10954 EMBL-EBI
WormBase CE29542 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599817_S_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE:1599816_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE:1587527_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE_2:CFA.18883.1.S1_S_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE_2:CFA.19484.1.S1_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE_2:CFAAFFX.8829.1.S1_S_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE_2:CFAAFFX.8834.1.S1_S_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
CANINE_2:CFAAFFX.8835.1.S1_AT similar to cutaneous T-cell lymphoma tumor antigen se70-2 cfa
DROSOPHILA_2:1635567_S_AT dm
DROSGENOME1:155118_AT dm
CHICKEN:GGA.10329.1.S1_S_AT similar to Cutaneous T-cell lymphoma tumor antigen se70-2 gga
CHICKEN:GGA.12127.1.S1_S_AT similar to Cutaneous T-cell lymphoma tumor antigen se70-2 gga
CHICKEN:GGAAFFX.25124.1.S1_S_AT similar to Cutaneous T-cell lymphoma tumor antigen se70-2 gga
CHICKEN:GGAAFFX.25124.2.S1_AT similar to Cutaneous T-cell lymphoma tumor antigen se70-2 gga
CHICKEN:GGAAFFX.25124.3.S1_S_AT similar to Cutaneous T-cell lymphoma tumor antigen se70-2 gga
HG-U133_PLUS_2:220509_AT chromosome 13 open reading frame 10 hs
HG-U133A:220509_AT chromosome 13 open reading frame 10 hs
HG-U133A_2:220509_AT chromosome 13 open reading frame 10 hs
HU35KSUBB:RC_H66947_AT chromosome 13 open reading frame 10 hs
HU35KSUBC:RC_N22273_AT chromosome 13 open reading frame 10 hs
HG-U133A:218422_S_AT chromosome 13 open reading frame 10 hs
HG-U133_PLUS_2:218422_S_AT chromosome 13 open reading frame 10 hs
HG-FOCUS:218422_S_AT chromosome 13 open reading frame 10 hs
HG-U133A_2:218422_S_AT chromosome 13 open reading frame 10 hs
U133_X3P:G8924078_3P_AT chromosome 13 open reading frame 10 hs
U133_X3P:G11545836_3P_A_AT chromosome 13 open reading frame 10 hs
U133_X3P:HS.39140.0.A1_3P_AT chromosome 13 open reading frame 10 hs
U133_X3P:HS.131715.1.S1_3P_AT chromosome 13 open reading frame 10 hs
HG-U133_PLUS_2:222626_AT chromosome 13 open reading frame 10 hs
HG-U133B:222626_AT chromosome 13 open reading frame 10 hs
HG-U133_PLUS_2:227355_AT chromosome 13 open reading frame 10 hs
HG-U133B:227355_AT chromosome 13 open reading frame 10 hs
HG-U95B:47891_AT chromosome 13 open reading frame 10 hs
HG-U95B:51986_AT chromosome 13 open reading frame 10 hs
HG-U95E:87103_AT chromosome 13 open reading frame 10 hs
HG-U95E:90209_AT chromosome 13 open reading frame 10 hs
HG-U95B:58199_AT Chromosome 13 open reading frame 10 hs
HG-U95D:81973_R_AT Chromosome 13 open reading frame 10 hs
MOUSE430_2:1442038_AT RIKEN cDNA 1700009P03 gene mm
MOE430B:1442038_AT RIKEN cDNA 1700009P03 gene mm
MG-U74BV2:115035_AT RIKEN cDNA 1700009P03 gene mm
MG-U74BV2:116122_AT RIKEN cDNA 1700009P03 gene mm
MG-U74AV2:160600_AT RIKEN cDNA 1700009P03 gene mm
MG-U74CV2:167101_AT RIKEN cDNA 1700009P03 gene mm
MOE430A:1426419_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430A_2:1426419_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430_2:1426419_AT RIKEN cDNA 1700009P03 gene mm
MOE430A:1426420_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430A_2:1426420_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430_2:1426420_AT RIKEN cDNA 1700009P03 gene mm
MOE430A:1426421_S_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430A_2:1426421_S_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430_2:1426421_S_AT RIKEN cDNA 1700009P03 gene mm
MOE430A:1426803_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430A_2:1426803_AT RIKEN cDNA 1700009P03 gene mm
MOUSE430_2:1426803_AT RIKEN cDNA 1700009P03 gene mm
MG-U74BV2:113463_AT RIKEN cDNA 1700009P03 gene, mRNA (cDNA clone IMAGE:3490473) mm
MG-U74CV2:130604_AT RIKEN cDNA 1700009P03 gene, mRNA (cDNA clone IMAGE:3490473) mm
MU19KSUBA:TC21857_AT RIKEN cDNA 1700009P03 gene, mRNA (cDNA clone IMAGE:3490473) mm
MU19KSUBA:TC21857_G_AT RIKEN cDNA 1700009P03 gene, mRNA (cDNA clone IMAGE:3490473) mm
RAE230B:1392669_AT similar to CG10084-PA (predicted) rn
RAT230_2:1392669_AT similar to CG10084-PA (predicted) rn
RAE230B:1393678_AT similar to CG10084-PA (predicted) rn
RAT230_2:1393678_AT similar to CG10084-PA (predicted) rn
RAE230B:1394756_AT Similar to CG10084-PA (predicted) rn
RAT230_2:1394756_AT Similar to CG10084-PA (predicted) rn
RAE230B:1397396_AT Similar to CG10084-PA (predicted) rn
RAT230_2:1397396_AT Similar to CG10084-PA (predicted) rn
RG-U34B:RC_AI059330_AT Similar to CG10084-PA (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18852 Hypothetical protein B0336.3 [Caenorhabditis elegans] ref|NP_498234.1| B0336.3 [Caenorhabditis elegans] 0.0
blast T15340 hypothetical protein B0336.3 - Caenorhabditis elegans 0.0
blast CAE64325 Hypothetical protein CBG09003 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.9E-8
Sequence
Target Sequence 
>C. ELEGANS:174054_AT
gttgcctatcagaaactgtttcgattttttctattgtatatccattataatttatcacat
ttcctctcttatcattctttaattgtcttcagtttaactgcccatttggcaatacttttt
catcttcattttttattgttcttggctaagaacttgtcatgtgatctgttcagaatcgca
atgattattgatttttacctgattccttgacaagttcccattattttttcgttcattttt
gttgtttgcattatttctatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCTATCAGAAACTGTTTCGAT 545 439 16 Antisense
TGTTTCGATTTTTTCTATTGTATAT 294 561 32 Antisense
ATAATTTATCACATTTCCTCTCTTA 164 27 62 Antisense
ATTTCCTCTCTTATCATTCTTTAAT 588 17 74 Antisense
ATTGTCTTCAGTTTAACTGCCCATT 527 3 97 Antisense
GCCCATTTGGCAATACTTTTTCATC 354 287 115 Antisense
TACTTTTTCATCTTCATTTTTTATT 668 645 128 Antisense
AACTTGTCATGTGATCTGTTCAGAA 203 139 166 Antisense
GATTTTTACCTGATTCCTTGACAAG 466 429 205 Antisense
TGACAAGTTCCCATTATTTTTTCGT 521 571 223 Antisense
TGTTGTTTGCATTATTTCTATCGAT 630 563 255 Antisense
Sequence Source Affymetrix Proprietary Database