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[174053_s_at]

Description C43925 /REP_DB=TREMBL Accession /GB=C43925 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336e6 : 5prime end, single read.
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 41.4
(-3)
A 		94.2
(0)
A 		48
(-2.6)
A 		146.1
(3)
P 		105
B 70.7
(-2.9)
P 		67.5
(-3)
A 		102.2
(-1.6)
A 		212.6
(3)
P 		145
C 95
(-3)
A 		105.6
(-2.5)
A 		105.3
(-2.5)
A 		221.3
(3)
P 		126
avr 69
(-3) 		89.1
(-2) 		85.2
(-2.2) 		193.3
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1069
1 2 3 4 5 6 range
A 76.1
(-2.8)
A 		49.8
(-3)
M 		141.3
(-2.4)
P 		175.6
(-2.2)
P 		427.7
(-0.5)
P 		960.4
(3)
P 		911
B 71.2
(-3)
A 		102.3
(-2.8)
A 		123.9
(-2.7)
A 		132.4
(-2.6)
P 		473.4
(-0.6)
P 		1061.9
(3)
P 		991
C 73.8
(-3)
A 		69.4
(-3)
A 		101.7
(-2.8)
A 		140.2
(-2.6)
P 		437.2
(-0.9)
P 		1118.6
(3)
P 		1049
avr 73.7
(-3) 		73.8
(-3) 		122.3
(-2.7) 		149.4
(-2.5) 		446.1
(-0.7) 		1047
(3) 		973
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 15.1
(-1.2)
A 		20.4
(2.3)
A 		12.5
(-3)
A 		21.4
(3)
P 		9
B 22.5
(-1.8)
P 		16.7
(-3)
A 		23.7
(-1.5)
A 		45.3
(3)
P 		29
C 31.4
(-2.1)
A 		30.4
(-3)
A 		36.7
(2.5)
A 		37.3
(3)
P 		7
avr 23
(-2.8) 		22.5
(-3) 		24.3
(-2.1) 		34.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 14
(-3)
A 		17.7
(-2.9)
M 		30.8
(-2.5)
P 		44.5
(-2.2)
P 		129.1
(0.1)
P 		233.8
(3)
P 		220
B 24.8
(-3)
A 		34
(-2.9)
A 		30.1
(-2.9)
A 		35.1
(-2.8)
P 		192.3
(-0.3)
P 		396
(3)
P 		371
C 27.3
(-2.9)
A 		21.2
(-3)
A 		25.9
(-2.9)
A 		28.2
(-2.9)
P 		141.5
(-1)
P 		374.5
(3)
P 		353
avr 22
(-3) 		24.3
(-3) 		28.9
(-2.9) 		35.9
(-2.7) 		154.3
(-0.5) 		334.8
(3) 		313
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174053_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21714
Sequence Type Exemplar sequence
Representative Public ID C43925 NCBI
Target Description C43925 /REP_DB=TREMBL Accession /GB=C43925 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336e6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072622 NCBI Caenorhabditis elegans C37C3.9 (C37C3.9) mRNA, complete cds. 11/11 A 
SNAP00000006080 ENSEMBL cdna:SNAP chromosome:CEL140:V:7855157:7856388:-1 9/11 None
GENEFINDER00000006094 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7855123:7856388:-1 11/11 None
C37C3.9 ENSEMBL cdna:known chromosome:CEL140:V:7854951:7856470:-1 gene:C37C3.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7855024-7855388(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.9
Entrez Gene 179164 Entrez gene
SwissProt Q22917 EMBL-EBI
WormBase CE27368 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25864 Hypothetical protein C37C3.9 [Caenorhabditis elegans] ref|NP_505023.1| C37C3.9 [Caenorhabditis elegans] 0.0
blast CAE73167 Hypothetical protein CBG20563 [Caenorhabditis briggsae] 1.0E-132
blast AAC25864 Hypothetical protein C37C3.9 [Caenorhabditis elegans] ref|NP_505023.1| C37C3.9 [Caenorhabditis elegans] 1.0E-127
blast CAE73167 Hypothetical protein CBG20563 [Caenorhabditis briggsae] 8.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:174053_S_AT
ccaccagctagacagtctcgttctaaaaacagaaagtcgttcgtcctctacctctgcaaa
tcgtgcaatcgtgaagtttgtgtgcagtgccggcgaagcctgtgctcacggctattcgaa
gattggatcaacgaattacgctcatagtactggcagattggaacacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCAGCTAGACAGTCTCGTTCTA 529 273 45 Antisense
GCTAGACAGTCTCGTTCTAAAAACA 457 303 51 Antisense
TCCTCTACCTCTGCAAATCGTGCAA 273 593 88 Antisense
TGCAAATCGTGCAATCGTGAAGTTT 590 577 99 Antisense
CGTGAAGTTTGTGTGCAGTGCCGGC 218 245 114 Antisense
AAGTTTGTGTGCAGTGCCGGCGAAG 360 155 118 Antisense
CCTGTGCTCACGGCTATTCGAAGAT 18 267 143 Antisense
TCACGGCTATTCGAAGATTGGATCA 434 627 150 Antisense
GATTGGATCAACGAATTACGCTCAT 231 435 165 Antisense
GAATTACGCTCATAGTACTGGCAGA 215 323 177 Antisense
TAGTACTGGCAGATTGGAACACAAT 366 653 189 Antisense
Sequence Source Affymetrix Proprietary Database