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[174051_s_at]

Description C67643 /REP_DB=TREMBL Accession /GB=C67643 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 20      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 06      6grp_total > 41      4grp_total > 60      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7597
1 2 3 4 range
A 10334.4
(1.6)
P 		11983.7
(3)
P 		10780.2
(2)
P 		4889
(-3)
P 		7095
B 10735.6
(2.2)
P 		11268.4
(2.7)
P 		11643.1
(3)
P 		4748.5
(-3)
P 		6895
C 10216.9
(2.3)
P 		10977.5
(3)
P 		9731.1
(1.9)
P 		4386.6
(-3)
P 		6591
avr 10429
(2.1) 		11409.9
(3) 		10718.1
(2.4) 		4674.7
(-3) 		6735

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6012
1 2 3 4 5 6 range
A 9970.8
(3)
P 		9794.1
(2.7)
P 		9516
(2.3)
P 		8717.8
(1.2)
P 		5906.9
(-3)
P 		6721.2
(-1.8)
P 		4064
B 8689.6
(0.3)
P 		8622.8
(0.2)
P 		10579.3
(3)
P 		8480
(0)
P 		6357
(-3)
P 		6633.6
(-2.6)
P 		4222
C 9325.8
(0)
P 		8274.3
(-1.2)
P 		11918.4
(3)
P 		9369.7
(0.1)
P 		6732.3
(-3)
P 		7356.5
(-2.3)
P 		5186
avr 9328.7
(1.1) 		8897.1
(0.5) 		10671.2
(3) 		8855.8
(0.5) 		6332.1
(-3) 		6903.8
(-2.2) 		4339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3047
1 2 3 4 range
A 3762.8
(3)
P 		2601.3
(0.7)
P 		2818.2
(1.1)
P 		715.7
(-3)
P 		3047
B 3423.5
(3)
P 		2783
(1.4)
P 		2698
(1.2)
P 		1011.9
(-3)
P 		2412
C 3382.1
(3)
P 		3156.1
(2.5)
P 		3391.6
(3)
P 		739.6
(-3)
P 		2652
avr 3522.8
(3) 		2846.8
(1.5) 		2969.3
(1.8) 		822.4
(-3) 		2700

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1847
1 2 3 4 5 6 range
A 1838
(-2.3)
P 		3483.3
(3)
P 		2072.4
(-1.6)
P 		2211
(-1.1)
P 		1782.4
(-2.5)
P 		1636.4
(-3)
P 		1847
B 3023.5
(3)
P 		2870.2
(1.8)
P 		2569
(-0.5)
P 		2246.1
(-3)
P 		2582.8
(-0.4)
P 		2473.6
(-1.2)
P 		777
C 3456.7
(3)
P 		2524.7
(-0.6)
P 		3033.4
(1.4)
P 		1884.2
(-3)
P 		2178.5
(-1.9)
P 		2462.7
(-0.8)
P 		1573
avr 2772.7
(1.7) 		2959.4
(3) 		2558.3
(0.2) 		2113.8
(-3) 		2181.2
(-2.5) 		2190.9
(-2.5) 		846
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174051_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22013
Sequence Type Exemplar sequence
Representative Public ID C67643 NCBI
Target Description C67643 /REP_DB=TREMBL Accession /GB=C67643 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070945 NCBI Caenorhabditis elegans T02B11.3a (T02B11.3) mRNA, complete cds. 11/11 None
SNAP00000007464 ENSEMBL cdna:SNAP chromosome:CEL140:V:864996:866656:-1 11/11 None
GENEFINDER00000007477 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:863933:866656:-1 11/11 None
T02B11.3a ENSEMBL cdna:known chromosome:CEL140:V:864903:866659:-1 gene:T02B11.3 11/11 None
T02B11.3b ENSEMBL cdna:known chromosome:CEL140:V:864930:866659:-1 gene:T02B11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178592 2 1 NM_070945 174051_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:864980-865260(-) 100.0 100.0
Public Domain and Genome References
Ensembl T02B11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO26005 Hypothetical protein T02B11.3a [Caenorhabditis elegans] ref|NP_503346.2| T02B11.3a [Caenorhabditis elegans] 1.0E-100
blast T32199 hypothetical protein T02B11.3 - Caenorhabditis elegans 2.0E-84
blast CAE62312 Hypothetical protein CBG06377 [Caenorhabditis briggsae] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:174051_S_AT
cgcttgtaaaccagtcatcaccaaaggtcttgcctccctcaacacctgcaagaagaacaa
caaggcaaccggaaccgccaagcaaaacgcttgcatcaacaaactctacggagactgtat
ggctatggttaccaagcaattcgtcaataaggtgtgcactgccctatccaagaagatgac
agctaaggaatggaattgctgcaagcagtatgctgtgaaggttgtcaatgttaagggata
cgcctgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTGTAAACCAGTCATCACCAAA 383 247 13 Antisense
AGTCATCACCAAAGGTCTTGCCTCC 495 61 25 Antisense
CTCCCTCAACACCTGCAAGAAGAAC 213 233 46 Antisense
CAACAAGGCAACCGGAACCGCCAAG 123 189 70 Antisense
GGAACCGCCAAGCAAAACGCTTGCA 680 527 83 Antisense
AAAACGCTTGCATCAACAAACTCTA 475 131 96 Antisense
CAAACTCTACGGAGACTGTATGGCT 61 191 112 Antisense
GACTGTATGGCTATGGTTACCAAGC 414 373 125 Antisense
CAATAAGGTGTGCACTGCCCTATCC 242 179 157 Antisense
GCACTGCCCTATCCAAGAAGATGAC 446 313 168 Antisense
CAATGTTAAGGGATACGCCTGCTAC 249 183 238 Antisense
Sequence Source Affymetrix Proprietary Database