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[174050_s_at] zinc-finger protein

Description C46803 /REP_DB=TREMBL Accession /GB=C46803 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk424h7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3650
1 2 3 4 range
A 1047.1
(-2.2)
P 		588.8
(-2.9)
P 		557.2
(-3)
P 		4163.6
(3)
P 		3606
B 1023
(-2.1)
P 		514
(-3)
P 		648.8
(-2.8)
P 		4086
(3)
P 		3572
C 900.8
(-2.3)
P 		527.5
(-3)
P 		658.9
(-2.7)
P 		3526.1
(3)
P 		2999
avr 990.3
(-2.2) 		543.4
(-3) 		621.6
(-2.9) 		3925.2
(3) 		3382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 579
1 2 3 4 5 6 range
A 469.3
(-0.4)
P 		354.3
(-2.7)
P 		363.4
(-2.5)
P 		340.8
(-3)
P 		424.3
(-1.3)
P 		639.2
(3)
P 		298
B 442.1
(-1.5)
P 		435.2
(-1.6)
P 		411.9
(-1.9)
P 		319.7
(-3)
P 		495.8
(-0.9)
P 		816.2
(3)
P 		497
C 492.4
(-0.7)
P 		464.8
(-1)
P 		272.8
(-3)
P 		356.9
(-2.1)
P 		447.4
(-1.2)
P 		851.4
(3)
P 		579
avr 467.9
(-1.2) 		418.1
(-1.9) 		349.4
(-2.9) 		339.1
(-3) 		455.8
(-1.4) 		768.9
(3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 744
1 2 3 4 range
A 381.3
(0.2)
P 		127.8
(-3)
P 		145.7
(-2.8)
P 		609.5
(3)
P 		482
B 326.2
(-1.4)
P 		126.9
(-3)
P 		150.3
(-2.8)
P 		870.7
(3)
P 		744
C 298.2
(-1)
P 		151.7
(-3)
P 		229.6
(-1.9)
P 		594.6
(3)
P 		443
avr 335.2
(-0.8) 		135.5
(-3) 		175.2
(-2.6) 		691.6
(3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 86.5
(-2.4)
P 		126
(0.7)
P 		79.1
(-3)
P 		86.4
(-2.4)
P 		128
(0.8)
P 		155.6
(3)
P 		77
B 153.8
(-1.1)
P 		144.8
(-1.4)
P 		100
(-2.6)
P 		84.7
(-3)
P 		201.4
(0.2)
P 		304.4
(3)
P 		220
C 182.5
(0.1)
P 		141.8
(-1)
P 		69.4
(-3)
P 		71.8
(-2.9)
P 		144.8
(-0.9)
P 		285
(3)
P 		216
avr 140.9
(-0.9) 		137.5
(-1) 		82.8
(-2.9) 		81
(-3) 		158.1
(-0.2) 		248.3
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174050_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20672
Sequence Type Exemplar sequence
Representative Public ID C46803 NCBI
Target Description C46803 /REP_DB=TREMBL Accession /GB=C46803 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk424h7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061767 NCBI Caenorhabditis elegans F07E5.5 (F07E5.5) mRNA, complete cds. 11/11 A 
SNAP00000023365 ENSEMBL cdna:SNAP chromosome:CEL140:II:2054011:2059064:-1 11/11 None
GENEFINDER00000023373 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2054011:2059064:-1 11/11 None
F07E5.5 ENSEMBL cdna:known chromosome:CEL140:II:2053927:2059071:-1 gene:F07E5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2053941-2054473(-) 98.27 98.27
Public Domain and Genome References
Gene Title zinc-finger protein
Ensembl F07E5.5
Entrez Gene 173564 Entrez gene
SwissProt P91223 EMBL-EBI
WormBase CE27916 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-168
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-161
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-149
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 1.0E-116
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 1.0E-109
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 6.0E-98
blast XP_424900 PREDICTED: similar to zinc finger, CCHC domain containing 9 [Gallus gallus] 7.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.5E-5
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.9E-7
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.5E-5
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.9E-7
Sequence
Target Sequence 
>C. ELEGANS:174050_S_AT
gcggttgctgtaacgtatgcggtgcaaatacccacttgagacgggattgtccggagctgg
cagctcagaaggccggcggagcacatttcgagaagaaacatttcaccgcccgtgcagcct
ccaactggaatactcaatccgccgacgcagactacgatccgactgaaaattcgacgcagg
agaagaagccggccgctgccgctgccaaaaaagcaacggcgaaacacattaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTTGCTGTAACGTATGCGGTGC 314 293 46 Antisense
TATGCGGTGCAAATACCCACTTGAG 79 657 61 Antisense
GAGACGGGATTGTCCGGAGCTGGCA 235 393 83 Antisense
GGAGCTGGCAGCTCAGAAGGCCGGC 45 519 98 Antisense
AGAAGGCCGGCGGAGCACATTTCGA 311 73 112 Antisense
AACTGGAATACTCAATCCGCCGACG 467 143 168 Antisense
ACGCAGACTACGATCCGACTGAAAA 693 89 190 Antisense
GATCCGACTGAAAATTCGACGCAGG 294 417 201 Antisense
TCGACGCAGGAGAAGAAGCCGGCCG 88 601 216 Antisense
CCGCTGCCGCTGCCAAAAAAGCAAC 619 261 238 Antisense
AAGCAACGGCGAAACACATTAAATT 275 151 256 Antisense
Sequence Source Affymetrix Proprietary Database