[Home] | [Total List]

[174049_s_at]

Description C43582 /REP_DB=TREMBL Accession /GB=C43582 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk330d7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 23      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 186.9
(3)
P 		133.3
(-3)
P 		146.8
(-1.5)
A 		158.7
(-0.2)
P 		54
B 156.6
(0.3)
P 		137
(-3)
M 		172.9
(3)
P 		141.6
(-2.2)
P 		36
C 173.1
(2)
P 		155.3
(-0.1)
A 		131.4
(-3)
P 		181.5
(3)
P 		50
avr 172.2
(3) 		141.9
(-3) 		150.4
(-1.3) 		160.6
(0.7) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 70.1
(-3)
P 		131.9
(2)
P 		104.8
(-0.2)
P 		87.5
(-1.6)
P 		110.2
(0.2)
P 		144.2
(3)
P 		74
B 87.6
(-2.5)
P 		157.7
(0.5)
P 		141.8
(-0.2)
P 		75.2
(-3)
P 		105.2
(-1.7)
P 		217.3
(3)
P 		142
C 102.4
(-0.6)
P 		135.8
(1.1)
P 		56.1
(-3)
P 		130
(0.8)
P 		95.5
(-1)
P 		173
(3)
P 		117
avr 86.7
(-3) 		141.8
(0.6) 		100.9
(-2.1) 		97.6
(-2.3) 		103.6
(-1.9) 		178.2
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 68.1
(3)
P 		28.9
(-2.2)
P 		38.4
(-1)
A 		23.2
(-3)
P 		45
B 49.9
(3)
P 		33.8
(-1.9)
M 		40.1
(0)
P 		30.2
(-3)
P 		20
C 57.3
(3)
P 		44.7
(0.2)
A 		45.8
(0.4)
P 		30.6
(-3)
P 		27
avr 58.4
(3) 		35.8
(-1.5) 		41.4
(-0.4) 		28
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 12.9
(-3)
P 		46.9
(3)
P 		22.8
(-1.3)
P 		22.2
(-1.4)
P 		33.3
(0.6)
P 		35.1
(0.9)
P 		34
B 30.5
(-2)
P 		52.5
(0.2)
P 		34.4
(-1.6)
P 		19.9
(-3)
P 		42.7
(-0.8)
P 		81
(3)
P 		61
C 37.9
(0.2)
P 		41.4
(0.7)
P 		14.3
(-3)
P 		26.1
(-1.4)
P 		30.9
(-0.7)
P 		57.9
(3)
P 		44
avr 27.1
(-2.3) 		46.9
(1.1) 		23.8
(-2.8) 		22.7
(-3) 		35.6
(-0.8) 		58
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174049_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21729
Sequence Type Exemplar sequence
Representative Public ID C43582 NCBI
Target Description C43582 /REP_DB=TREMBL Accession /GB=C43582 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk330d7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073226 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-143) (tag-143) mRNA, complete cds. 11/11 None
SNAP00000036957 ENSEMBL cdna:SNAP chromosome:CEL140:V:10213156:10214703:-1 11/11 None
GENEFINDER00000036965 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10213156:10214703:-1 11/11 None
ZK856.9 ENSEMBL cdna:known chromosome:CEL140:V:10213078:10214707:-1 gene:ZK856.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10213094-10213427(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-143
Ensembl ZK856.9
Entrez Gene 179420 Entrez gene
SwissProt Q23644 EMBL-EBI
WormBase CE29017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94857 Hypothetical protein ZK856.9 [Caenorhabditis elegans] ref|NP_505627.1| Temporarily Assigned Gene name family member (tag-143) [Caenorhabditis elegans] 0.0
blast CAE64758 Hypothetical protein CBG09548 [Caenorhabditis briggsae] 1.0E-147
blast XP_217694 PREDICTED: similar to hypothetical protein FLJ20729 [Rattus norvegicus] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR007529 EMBL-EBI HIT Zn-finger 2.1E-12
Sequence
Target Sequence 
>C. ELEGANS:174049_S_AT
cggaggcgccaatcgaggtggaggaggctcgaatcataatatcttcagaaaaagaccagg
acaagatggaggtcaagacggtggtttcaagcgtggacgcggcggaaatttccacggagg
aagccgaagaggtggatatcagaaccgcacccatcagaatatcgataccttcgacccatt
cgagcccttctccggaccaaatcgacttcctatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAGGCGCCAATCGAGGTGGAGGA 691 241 14 Antisense
GAGGTGGAGGAGGCTCGAATCATAA 151 403 28 Antisense
GAGGCTCGAATCATAATATCTTCAG 339 405 37 Antisense
GGAGGTCAAGACGGTGGTTTCAAGC 427 515 81 Antisense
CGGTGGTTTCAAGCGTGGACGCGGC 298 239 92 Antisense
GACGCGGCGGAAATTTCCACGGAGG 159 379 109 Antisense
GGAGGAAGCCGAAGAGGTGGATATC 78 515 129 Antisense
GGTGGATATCAGAACCGCACCCATC 404 499 144 Antisense
GAACCGCACCCATCAGAATATCGAT 393 345 155 Antisense
GAATATCGATACCTTCGACCCATTC 158 325 170 Antisense
TCCGGACCAAATCGACTTCCTATGG 203 595 204 Antisense
Sequence Source Affymetrix Proprietary Database