[Home] | [Total List]

[174044_at]

Description C71503 /REP_DB=TREMBL Accession /GB=C71503 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk446a1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      6grp_highest_nonorm > 32      6grp_total > 01      4grp_total > 49      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2848
1 2 3 4 range
A 39.6
(-3)
A 		2712.6
(3)
P 		2351.3
(2.2)
P 		128.1
(-2.8)
A 		2673
B 49.4
(-3)
A 		2613.9
(3)
P 		2609.6
(3)
P 		93
(-2.9)
M 		2565
C 6.3
(-3)
A 		2854.6
(3)
P 		2206.6
(1.6)
P 		75.8
(-2.9)
A 		2848
avr 31.8
(-3) 		2727
(3) 		2389.2
(2.2) 		99
(-2.9) 		2695

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1883
1 2 3 4 5 6 range
A 608.2
(-2.8)
P 		2328.5
(3)
P 		873.3
(-1.9)
P 		908.1
(-1.8)
P 		1479.2
(0.1)
P 		562.5
(-3)
P 		1766
B 562.5
(-2.6)
P 		1904.7
(3)
P 		800.2
(-1.6)
P 		1393.8
(0.9)
P 		1106.8
(-0.3)
P 		468.6
(-3)
P 		1436
C 751.1
(-1.8)
P 		2023.7
(3)
P 		1080.8
(-0.6)
P 		851.2
(-1.5)
P 		1233.1
(-0)
P 		445.3
(-3)
P 		1578
avr 640.6
(-2.4) 		2085.6
(3) 		918.1
(-1.4) 		1051
(-0.9) 		1273
(-0.1) 		492.1
(-3) 		1594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 819
1 2 3 4 range
A 14.4
(-3)
A 		588.8
(2.7)
P 		614.7
(3)
P 		18.8
(-3)
A 		600
B 15.7
(-3)
A 		645.6
(3)
P 		604.7
(2.6)
P 		19.8
(-3)
M 		630
C 2.1
(-3)
A 		820.7
(3)
P 		769.1
(2.6)
P 		12.8
(-2.9)
A 		819
avr 10.7
(-3) 		685
(3) 		662.8
(2.8) 		17.1
(-2.9) 		674

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 112.1
(-3)
P 		828.1
(3)
P 		190.2
(-2.3)
P 		230.3
(-2)
P 		446.4
(-0.2)
P 		136.9
(-2.8)
P 		716
B 195.7
(-2.7)
P 		634
(3)
P 		194.3
(-2.7)
P 		369.2
(-0.5)
P 		449.7
(0.6)
P 		174.7
(-3)
P 		459
C 278.4
(-1.3)
P 		617.5
(3)
P 		275.1
(-1.4)
P 		171.2
(-2.7)
P 		399
(0.2)
P 		149.1
(-3)
P 		468
avr 195.4
(-2.5) 		693.2
(3) 		219.9
(-2.3) 		256.9
(-1.9) 		431.7
(0.1) 		153.6
(-3) 		540
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21153
Sequence Type Exemplar sequence
Representative Public ID C71503 NCBI
Target Description C71503 /REP_DB=TREMBL Accession /GB=C71503 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk446a1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066658(11), NM_001027493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066658 NCBI Caenorhabditis elegans K04H4.2a (K04H4.2) mRNA, complete cds. 11/11 None
NM_001027493 NCBI Caenorhabditis elegans K04H4.2c (K04H4.2) mRNA, complete cds. 11/11 None
K04H4.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:9347611:9355358:-1 gene:K04H4.2 11/11 None
K04H4.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:9347649:9355241:-1 gene:K04H4.2 11/11 A 
K04H4.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:9347651:9355358:-1 gene:K04H4.2 11/11 None
K04H4.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:9347670:9355241:-1 gene:K04H4.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032558 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176315 3 2 NM_001027493 174044_at (11), 190901_s_at (10)
NM_066657 190901_s_at (10)
NM_066658 174044_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9347712-9348066(-) 88.98 100.0
Public Domain and Genome References
Ensembl K04H4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA81587 Hypothetical protein K04H4.2a [Caenorhabditis elegans] ref|NP_499059.2| K04H4.2a [Caenorhabditis elegans] 0.0
blast CAA81588 Hypothetical protein K04H4.2b [Caenorhabditis elegans] ref|NP_499058.3| K04H4.2b [Caenorhabditis elegans] 0.0
blast B88553 protein K04H4.2b [imported] - Caenorhabditis elegans 0.0
blast CAH04706 Hypothetical protein K04H4.2c [Caenorhabditis elegans] ref|NP_001022664.1| K04H4.2c [Caenorhabditis elegans] sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Pfam IPR007026 EMBL-EBI CC domain 0.89
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Sequence
Target Sequence 
>C. ELEGANS:174044_AT
gaagcgtgcattacaacgtctctgcgctttgtattacttttctagctcataattgtttta
ctttccttttttccaaatatttattatcaaacgctcaatttctcttttttttcaaattga
ttctaagtctttcctatctcccgtttcaacctgtccaccactctttcaccaaataattat
tgccgcaaccttattttttgttttgaatttgtccacatttttccccagctgtttttggac
aaaaacagtaattccttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGTGCATTACAACGTCTCTGC 292 343 14 Antisense
TACAACGTCTCTGCGCTTTGTATTA 264 643 25 Antisense
CTTTGTATTACTTTTCTAGCTCATA 503 223 40 Antisense
AGCTCATAATTGTTTTACTTTCCTT 537 77 57 Antisense
ATCAAACGCTCAATTTCTCTTTTTT 528 27 99 Antisense
TTGATTCTAAGTCTTTCCTATCTCC 46 703 130 Antisense
CCACCACTCTTTCACCAAATAATTA 606 273 168 Antisense
ACCAAATAATTATTGCCGCAACCTT 304 85 181 Antisense
TATTGCCGCAACCTTATTTTTTGTT 27 665 191 Antisense
TTGAATTTGTCCACATTTTTCCCCA 437 701 216 Antisense
GGACAAAAACAGTAATTCCTTGAGA 297 521 250 Antisense
Sequence Source Affymetrix Proprietary Database