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[174038_at] GTPase-activating protein

Description g437180 /REP_DB=GenBank Identifier /CHR=3 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 30      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1133
1 2 3 4 range
A 1287.5
(3)
P 		717.1
(-1.7)
P 		564.9
(-3)
P 		1205.2
(2.3)
P 		723
B 1698
(3)
P 		842.9
(-1.7)
P 		602.3
(-3)
P 		1199.1
(0.3)
P 		1096
C 1454.6
(3)
P 		1044
(-0.4)
P 		729.6
(-3)
P 		803.5
(-2.4)
P 		725
avr 1480
(3) 		868
(-1.3) 		632.3
(-3) 		1069.3
(0.1) 		848

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1422
1 2 3 4 5 6 range
A 1663.8
(3)
P 		1064.8
(-0.4)
P 		599.2
(-3)
P 		711.1
(-2.4)
P 		1108.6
(-0.1)
P 		615
(-2.9)
P 		1065
B 1831.2
(3)
P 		1375
(1)
P 		468.2
(-3)
P 		944.1
(-0.9)
P 		600.6
(-2.4)
P 		757.7
(-1.7)
P 		1363
C 1481.1
(3)
P 		1041
(0.5)
P 		853.8
(-0.5)
P 		467.1
(-2.7)
P 		886.6
(-0.3)
P 		409.1
(-3)
P 		1072
avr 1658.7
(3) 		1160.3
(0.2) 		640.4
(-2.7) 		707.4
(-2.4) 		865.3
(-1.5) 		593.9
(-3) 		1065
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 468.8
(3)
P 		155.7
(-2.9)
P 		147.7
(-3)
P 		176.4
(-2.5)
P 		321
B 541.5
(3)
P 		208.2
(-2)
P 		139.6
(-3)
P 		255.5
(-1.3)
P 		402
C 481.5
(3)
P 		300.2
(-0.1)
P 		254.3
(-0.9)
P 		135.5
(-3)
P 		346
avr 497.3
(3) 		221.4
(-2.2) 		180.5
(-3) 		189.1
(-2.8) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 306.7
(1.3)
P 		378.7
(3)
P 		130.5
(-3)
P 		180.4
(-1.8)
P 		334.5
(1.9)
P 		149.7
(-2.5)
P 		248
B 637.2
(3)
P 		457.7
(0.9)
P 		113.7
(-3)
P 		250.1
(-1.4)
P 		244
(-1.5)
P 		282.5
(-1.1)
P 		524
C 549
(3)
P 		317.6
(-0.1)
P 		217.3
(-1.4)
P 		93.9
(-3)
P 		286.9
(-0.5)
P 		136.9
(-2.4)
P 		455
avr 497.6
(3) 		384.7
(1) 		153.8
(-3) 		174.8
(-2.6) 		288.5
(-0.6) 		189.7
(-2.4) 		344
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21179
Sequence Type Exemplar sequence
Representative Public ID 437180 NCBI
Target Description g437180 /REP_DB=GenBank Identifier /CHR=3 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066476 NCBI Caenorhabditis elegans C04D8.1 (C04D8.1) mRNA, complete cds. 11/11 None
C04D8.1 ENSEMBL cdna:known chromosome:CEL140:III:8497536:8518789:1 gene:C04D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8518401-8518754(+) 83.85 100.0
Public Domain and Genome References
Gene Title GTPase-activating protein
Ensembl C04D8.1
Entrez Gene 176201 Entrez gene
SwissProt P34288 EMBL-EBI
WormBase CE33028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71357 Hypothetical protein C04D8.1 [Caenorhabditis elegans] ref|NP_498877.3| C04D8.1 [Caenorhabditis elegans] sp|P34288|GAP_CAEEL GTPase-activating protein GAP (CeGAP) 0.0
blast AAA18934 GTPase-activating protein 0.0
blast CAE71244 Hypothetical protein CBG18119 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 4.0E-18
Pfam IPR000198 EMBL-EBI RhoGAP domain 3.1E-71
Sequence
Target Sequence 
>C. ELEGANS:174038_AT
agagctgtctctgaaagtcaccacctcttacgaacttgtgatttcttcggtttctttgaa
atttaaagaattcccctttttttgtttctagtgagatctccttcagaaaaatcttaaaca
tatatttttctattattgttaatcctttccatttccatgttcaaccccttttccttcatt
ttcttcagaatatcatcctttcgtacctccggtatgggtttcttctcctcatttctccat
tcatttcgcatacatatttctttctttaactcttttttcctttttttcatgtactttata
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCTGTCTCTGAAAGTCACCACC 698 67 35 Antisense
GTCACCACCTCTTACGAACTTGTGA 553 465 51 Antisense
TACGAACTTGTGATTTCTTCGGTTT 66 647 63 Antisense
GTTTCTAGTGAGATCTCCTTCAGAA 687 449 118 Antisense
TATTGTTAATCCTTTCCATTTCCAT 491 665 168 Antisense
TAATCCTTTCCATTTCCATGTTCAA 652 635 174 Antisense
TCCTTCATTTTCTTCAGAATATCAT 144 593 206 Antisense
TCAGAATATCATCCTTTCGTACCTC 673 623 219 Antisense
TTTCTCCATTCATTTCGCATACATA 606 671 266 Antisense
TACATATTTCTTTCTTTAACTCTTT 154 645 285 Antisense
TTCCTTTTTTTCATGTACTTTATAT 671 697 311 Antisense
Sequence Source GenBank