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[174037_at] transcription factor

Description g551223 /REP_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 0      6grp_total > 29      4grp_total > 59      6grp_highest_sub > Cu      6grp_cgc > 01      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1611
1 2 3 4 range
A 1778
(1.3)
P 		1871.7
(1.7)
P 		2144.9
(3)
P 		850.8
(-3)
P 		1294
B 1709.9
(0.2)
P 		2120.7
(3)
P 		2030.3
(2.4)
P 		1234.8
(-3)
P 		886
C 1952.2
(1)
P 		2091.1
(1.6)
P 		2462
(3)
P 		916.7
(-3)
P 		1545
avr 1813.4
(1) 		2027.8
(2.1) 		2212.4
(3) 		1000.8
(-3) 		1212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1296
1 2 3 4 5 6 range
A 1947.6
(3)
P 		1615.2
(1.1)
P 		902.2
(-3)
P 		1326.9
(-0.6)
P 		1746.2
(1.8)
P 		1701.9
(1.6)
P 		1045
B 2069.7
(3)
P 		1368.3
(-2)
P 		1225.2
(-3)
P 		1468
(-1.3)
P 		1498.3
(-1.1)
P 		1366.8
(-2)
P 		845
C 2198.4
(3)
P 		1259.4
(-2.9)
P 		1472
(-1.6)
P 		1248.2
(-3)
P 		1629.1
(-0.6)
P 		1300.2
(-2.7)
P 		950
avr 2071.9
(3) 		1414.3
(-1.5) 		1199.8
(-3) 		1347.7
(-2) 		1624.5
(-0.1) 		1456.3
(-1.2) 		872
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 647.4
(3)
P 		406.3
(0.2)
P 		560.7
(2)
P 		124.5
(-3)
P 		523
B 545.3
(3)
P 		523.8
(2.5)
P 		470.5
(1.4)
P 		263.1
(-3)
P 		282
C 646.2
(1.2)
P 		601.2
(0.8)
P 		858.1
(3)
P 		154.6
(-3)
P 		704
avr 613
(2.8) 		510.4
(1.4) 		629.8
(3) 		180.7
(-3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 618
1 2 3 4 5 6 range
A 359
(-0.4)
P 		574.5
(3)
P 		196.5
(-3)
P 		336.5
(-0.8)
P 		526.9
(2.2)
P 		414.4
(0.5)
P 		378
B 720.2
(3)
P 		455.5
(-0.8)
P 		297.5
(-3)
P 		388.8
(-1.7)
P 		608.7
(1.4)
P 		509.7
(0)
P 		423
C 814.9
(3)
P 		384.3
(-1.6)
P 		374.7
(-1.7)
P 		251
(-3)
P 		527.1
(-0.1)
P 		435.2
(-1)
P 		564
avr 631.4
(3) 		471.4
(0.2) 		289.6
(-3) 		325.4
(-2.4) 		554.2
(1.6) 		453.1
(-0.1) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20654
Sequence Type Exemplar sequence
Representative Public ID 551223 NCBI
Target Description g551223 /REP_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026921 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-26) (lin-26) mRNA, complete cds. 11/11 None
F18A1.2.3 ENSEMBL cdna:known chromosome:CEL140:II:7681882:7684677:1 gene:F18A1.2 11/11 None
F18A1.2.2 ENSEMBL cdna:known chromosome:CEL140:II:7682388:7684674:1 gene:F18A1.2 11/11 A 
F18A1.2.1 ENSEMBL cdna:known chromosome:CEL140:II:7682392:7684680:1 gene:F18A1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013723 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7684218-7684602(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor
Gene Symbol lin-26
Ensembl F18A1.2
Entrez Gene 3565051 Entrez gene
SwissProt Q27355 EMBL-EBI
WormBase CE27972 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK67251 Abnormal cell lineage protein 26 [Caenorhabditis elegans] ref|NP_001022092.1| abnormal cell LINeage family member (lin-26) [Caenorhabditis elegans] sp|Q27355|LIN26_CAEEL Transcription factor lin-26 (Abnormal cell lineage protein 26) emb|CAA10262.1| LIN-26B [Caenorhabditis elegans] 0.0
blast CAA83585 transcription factor [Caenorhabditis elegans] 0.0
blast CAA10469 LIN-26B protein [Caenorhabditis briggsae] emb|CAA10313.1| LIN-26B [Caenorhabditis briggsae] emb|CAE67513.1| Hypothetical protein CBG13032 [Caenorhabditis briggsae] 1.0E-165
Sequence
Target Sequence 
>C. ELEGANS:174037_AT
tccaatctgaatacaccttgcctctcatttgctttttcattccttccgattattgttctg
tgatatttccttccagtatttcgttctggttgtgccttttcattcacccgcaggtccggt
taattgaaagttcactttgcccccacaaattttgcctttatcttctctgttacagtgcct
taattcactttttccattgtacaccttttttaactttactctttgccacaccattcagtt
tctcgacgggtatttatgttgaatgatagcattctttcatcagcattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAATCTGAATACACCTTGCCTCT 127 587 37 Antisense
CATTCCTTCCGATTATTGTTCTGTG 538 217 74 Antisense
GATATTTCCTTCCAGTATTTCGTTC 169 427 98 Antisense
TTCTGGTTGTGCCTTTTCATTCACC 375 695 120 Antisense
ATTCACCCGCAGGTCCGGTTAATTG 436 11 138 Antisense
TAATTGAAAGTTCACTTTGCCCCCA 575 321 157 Antisense
GCCTTTATCTTCTCTGTTACAGTGC 583 279 190 Antisense
ACAGTGCCTTAATTCACTTTTTCCA 179 107 208 Antisense
TCACTTTTTCCATTGTACACCTTTT 296 627 221 Antisense
CACACCATTCAGTTTCTCGACGGGT 64 189 263 Antisense
ATAGCATTCTTTCATCAGCATTCGA 188 23 302 Antisense
Sequence Source GenBank