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[174036_at] carrier protein C2

Description g472899 /REP_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 84      6grp_total > 39      4grp_total > 05      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 828.5
(0.1)
P 		530.3
(-3)
P 		687.5
(-1.4)
P 		1109.6
(3)
P 		579
B 733.8
(-1.4)
P 		632.7
(-2.8)
P 		617.3
(-3)
P 		1065.6
(3)
P 		448
C 776.6
(-0.8)
P 		678.2
(-3)
P 		704.9
(-2.4)
P 		944.8
(3)
P 		267
avr 779.6
(-0.7) 		613.7
(-3) 		669.9
(-2.2) 		1040
(3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 672.1
(1.2)
P 		797
(3)
P 		369.1
(-3)
P 		492.9
(-1.3)
P 		733.4
(2.1)
P 		708.8
(1.8)
P 		428
B 750.8
(3)
P 		682.5
(1.9)
P 		374.9
(-3)
P 		526.7
(-0.6)
P 		682.1
(1.9)
P 		739.3
(2.8)
P 		376
C 595.1
(0.4)
P 		693.6
(2)
P 		507.1
(-1.1)
P 		392.8
(-3)
P 		752.4
(3)
P 		606.9
(0.6)
P 		360
avr 672.7
(2) 		724.4
(3) 		417
(-3) 		470.8
(-1.9) 		722.6
(3) 		685
(2.2) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 301.6
(3)
P 		115.1
(-3)
P 		179.7
(-0.9)
P 		162.4
(-1.5)
P 		187
B 234
(3)
P 		156.3
(-2.1)
P 		143
(-3)
P 		227.1
(2.5)
P 		91
C 257.1
(3)
P 		195
(-0.8)
P 		245.7
(2.3)
P 		159.3
(-3)
P 		98
avr 264.2
(3) 		155.5
(-3) 		189.5
(-1.1) 		182.9
(-1.5) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 123.9
(-1.7)
P 		283.5
(3)
P 		80.4
(-3)
P 		125
(-1.7)
P 		221.3
(1.2)
P 		172.6
(-0.3)
P 		203
B 261.2
(2.5)
P 		227.2
(1.4)
P 		91
(-3)
P 		139.5
(-1.4)
P 		277.1
(3)
P 		275.7
(3)
P 		186
C 220.6
(2.2)
P 		211.6
(1.8)
P 		129.1
(-1.2)
P 		79
(-3)
P 		243.4
(3)
P 		203.2
(1.5)
P 		164
avr 201.9
(1.1) 		240.8
(2.7) 		100.2
(-3) 		114.5
(-2.4) 		247.3
(3) 		217.2
(1.8) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20622
Sequence Type Exemplar sequence
Representative Public ID 472899 NCBI
Target Description g472899 /REP_DB=GenBank Identifier /CHR=2 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063835 NCBI Caenorhabditis elegans T09F3.2 (T09F3.2) mRNA, complete cds. 11/11 A 
T09F3.2 ENSEMBL cdna:known chromosome:CEL140:II:10391064:10393531:1 gene:T09F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10393160-10393449(+) 100.0 100.0
Public Domain and Genome References
Gene Title carrier protein C2
Ensembl T09F3.2
Entrez Gene 174602 Entrez gene
SwissProt Q27244 EMBL-EBI
WormBase CE02342 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625651_AT dm
DROSGENOME1:141322_AT dm
MG-U74BV2:106089_AT solute carrier family 25, member 36 mm
MG-U74AV2:160683_AT solute carrier family 25, member 36 mm
MOE430A:1419657_A_AT solute carrier family 25, member 36 mm
MOUSE430A_2:1419657_A_AT solute carrier family 25, member 36 mm
MOUSE430_2:1419657_A_AT solute carrier family 25, member 36 mm
MOE430A:1419656_AT solute carrier family 25, member 36 mm
MOUSE430A_2:1419656_AT solute carrier family 25, member 36 mm
MOUSE430_2:1419656_AT solute carrier family 25, member 36 mm
MOE430B:1438520_AT solute carrier family 25, member 36 mm
MOUSE430_2:1438520_AT solute carrier family 25, member 36 mm
MOUSE430_2:1447297_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
MOE430B:1447297_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
MU19KSUBA:TC21310_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
YEAST_2:1778943_AT Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6839 mitochondrial transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88869 Hypothetical protein T09F3.2 [Caenorhabditis elegans] ref|NP_496236.1| T09F3.2 [Caenorhabditis elegans] emb|CAA53722.1| carrier protein (c2) [Caenorhabditis elegans] 1.0E-180
blast CAE59385 Hypothetical protein CBG02742 [Caenorhabditis briggsae] 1.0E-159
blast EAA05757 ENSANGP00000015067 [Anopheles gambiae str. PEST] ref|XP_310002.2| ENSANGP00000015067 [Anopheles gambiae str. PEST] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 8.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:174036_AT
tttctctttttcgagtattctaacgtttttaaatagcagattcgacctttctttttgcaa
agtttaaaatagttaagccctgtttgtttgttttgttgaaagcccacaggaaccaattta
ctacttctgttccttttctccattattaaatcatccttatctttctttcatccgcctctt
tttccggtcgctgcgaaaatgattgtgtgctctcttccttcccctgttaacagtttcttt
cttctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTCTTTTTCGAGTATTCTAACG 399 671 17 Antisense
AATAGCAGATTCGACCTTTCTTTTT 485 171 48 Antisense
CAGATTCGACCTTTCTTTTTGCAAA 412 205 53 Antisense
TTTGTTTTGTTGAAAGCCCACAGGA 212 665 103 Antisense
GAAAGCCCACAGGAACCAATTTACT 587 357 114 Antisense
GAACCAATTTACTACTTCTGTTCCT 708 341 126 Antisense
TCTGTTCCTTTTCTCCATTATTAAA 221 607 142 Antisense
TAAATCATCCTTATCTTTCTTTCAT 404 641 163 Antisense
CTCTTTTTCCGGTCGCTGCGAAAAT 189 231 192 Antisense
AAAATGATTGTGTGCTCTCTTCCTT 270 133 212 Antisense
CTGTTAACAGTTTCTTTCTTCTCCG 232 239 240 Antisense
Sequence Source GenBank