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[174035_s_at]

Description g807870 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Cluster 6grp_total > 84      4grp_total > 58      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 26.4
(-0.3)
P 		47.7
(3)
A 		41
(2)
A 		9.3
(-3)
A 		38
B 44.4
(1.5)
A 		55
(3)
A 		38.2
(0.6)
A 		12.4
(-3)
A 		43
C 46
(-1.7)
A 		34.7
(-3)
A 		57.2
(-0.4)
P 		86.1
(3)
A 		51
avr 38.9
(-1.2) 		45.8
(3) 		45.5
(2.8) 		35.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 9.8
(-3)
A 		44.8
(0.5)
M 		61.9
(2.2)
A 		69.8
(3)
P 		44.9
(0.5)
A 		63
(2.3)
P 		60
B 41.2
(-0.9)
A 		26.8
(-3)
A 		33.5
(-2)
A 		54.2
(1)
M 		68.4
(3)
P 		35
(-1.8)
A 		42
C 26.8
(-2.6)
A 		23.4
(-3)
A 		40.6
(-1.2)
A 		58.2
(0.7)
M 		79.3
(3)
P 		41.4
(-1.1)
A 		56
avr 25.9
(-3) 		31.7
(-2.1) 		45.3
(0) 		60.7
(2.5) 		64.2
(3) 		46.5
(0.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.6
(2.3)
P 		10.4
(2.8)
A 		10.7
(3)
A 		1.4
(-3)
A 		9
B 14.2
(3)
A 		13.6
(2.7)
A 		8.8
(0.2)
A 		2.7
(-3)
A 		12
C 15.2
(0.1)
A 		10
(-3)
A 		20
(3)
P 		14.5
(-0.3)
A 		10
avr 13
(2.8) 		11.3
(1.4) 		13.2
(3) 		6.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.8
(-3)
A 		15.9
(2.3)
M 		13.5
(1.4)
A 		17.7
(3)
P 		13.6
(1.5)
A 		15.3
(2.1)
P 		16
B 14.3
(-1.1)
A 		8.9
(-2.8)
A 		8.1
(-3)
A 		14.4
(-1.1)
M 		27.8
(3)
P 		13.1
(-1.5)
A 		20
C 9.9
(-2.1)
A 		7.1
(-3)
A 		10.3
(-2)
A 		11.7
(-1.5)
M 		25.7
(3)
P 		13.9
(-0.8)
A 		19
avr 8.7
(-3) 		10.6
(-2.2) 		10.6
(-2.2) 		14.6
(-0.4) 		22.4
(3) 		14.1
(-0.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21482
Sequence Type Exemplar sequence
Representative Public ID 807870 NCBI
Target Description g807870 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068691 NCBI Caenorhabditis elegans Component of GOlgi (homolog of human COG) family member (cgo-2) (cgo-2) mRNA, complete cds. 11/11 A 
SNAP00000008741 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7037067:7039531:-1 11/11 None
GENEFINDER00000008752 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7037067:7039849:-1 11/11 None
C06G3.10 ENSEMBL cdna:known chromosome:CEL140:IV:7036942:7039563:-1 gene:C06G3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7039106-7039480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cgo-2
Ensembl C06G3.10
Entrez Gene 177473 Entrez gene
SwissProt Q21444 EMBL-EBI
WormBase CE28817 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254087_AT expressed protein at
CANINE:1604625_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE:1598093_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE_2:CFA.17409.1.S1_S_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
CANINE_2:CFAAFFX.18781.1.S1_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) cfa
DROSOPHILA_2:1633420_AT ldlCp-related protein dm
DROSGENOME1:144152_AT ldlCp-related protein dm
CHICKEN:GGAAFFX.7045.1.S1_AT similar to Conserved oligomeric Golgi complex component 2 (Low density lipoprotein receptor defect C-complementing protein) gga
HG-U133A:203073_AT component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:203073_AT component of oligomeric golgi complex 2 hs
HG-FOCUS:203073_AT component of oligomeric golgi complex 2 hs
HG-U133A_2:203073_AT component of oligomeric golgi complex 2 hs
HUGENEFL:Z34975_AT component of oligomeric golgi complex 2 hs
U133_X3P:G6678675_3P_AT component of oligomeric golgi complex 2 hs
HG-U95AV2:38390_AT component of oligomeric golgi complex 2 hs
HU35KSUBC:RC_N58542_AT Component of oligomeric golgi complex 2 hs
U133_X3P:HS.39194.0.A1_3P_AT Component of oligomeric golgi complex 2 hs
U133_X3P:HS.226925.0.A1_3P_AT Component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:237433_AT Component of oligomeric golgi complex 2 hs
HG-U133B:237433_AT Component of oligomeric golgi complex 2 hs
HG-U133_PLUS_2:243608_AT Component of oligomeric golgi complex 2 hs
HG-U133B:243608_AT Component of oligomeric golgi complex 2 hs
HG-U95C:52582_AT Component of oligomeric golgi complex 2 hs
HG-U95E:87574_AT Component of oligomeric golgi complex 2 hs
HG-U95B:55350_AT Component of oligomeric golgi complex 2 hs
HU35KSUBB:RC_AA016245_AT Component of oligomeric golgi complex 2 hs
MG-U74BV2:114705_AT component of oligomeric golgi complex 2 mm
MOE430A:1416932_AT component of oligomeric golgi complex 2 mm
MOUSE430A_2:1416932_AT component of oligomeric golgi complex 2 mm
MOUSE430_2:1416932_AT component of oligomeric golgi complex 2 mm
MU19KSUBB:TC28727_AT Component of oligomeric golgi complex 2 (Cog2), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAB03139 Component of golgi (homolog of human cog) protein 2 [Caenorhabditis elegans] ref|NP_501092.1| Component of GOlgi (homolog of human COG) family member (cgo-2) [Caenorhabditis elegans] sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex component 2 (LDLC protein homolog) emb|CAA84428.1| Cog2 protein [Caenorhabditis elegans] 0.0
blast T30098 hypothetical protein C06G3.10 - Caenorhabditis elegans 0.0
blast CAE57451 Hypothetical protein CBG00414 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009316 EMBL-EBI COG complex component, COG2 1.0E-126
Pfam IPR009316 EMBL-EBI COG complex component, COG2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174035_S_AT
gttatgctttaataagacccatttcaatcgagaagattttaatgtggaacgatttatgaa
cttggcaaggcaaaaatctgatctcaaaacaattcagcaggatctacgcctctacttgaa
aagtgttcaaaattcaatgatcgagcttatcaacgatgattatgcggattttgtccattt
atcgtcaaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGCTTTAATAAGACCCATTTC 6 447 24 Antisense
TAATAAGACCCATTTCAATCGAGAA 504 631 33 Antisense
GAACGATTTATGAACTTGGCAAGGC 705 347 70 Antisense
AATCTGATCTCAAAACAATTCAGCA 378 169 98 Antisense
CAATTCAGCAGGATCTACGCCTCTA 134 181 113 Antisense
GATCTACGCCTCTACTTGAAAAGTG 163 417 124 Antisense
GTGTTCAAAATTCAATGATCGAGCT 432 485 146 Antisense
ATGATCGAGCTTATCAACGATGATT 277 47 160 Antisense
AACGATGATTATGCGGATTTTGTCC 245 143 175 Antisense
GCGGATTTTGTCCATTTATCGTCAA 710 291 187 Antisense
TTTTGTCCATTTATCGTCAAACTTG 199 675 192 Antisense
Sequence Source GenBank