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[174034_at] mecanosensory gene mec-8

Description g1370047 /REP_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 39      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 1361.1
(3)
P 		484
(-3)
P 		727.9
(-1.3)
P 		851.7
(-0.5)
P 		877
B 1456.8
(3)
P 		770.3
(-2.2)
P 		660
(-3)
P 		830.9
(-1.7)
P 		797
C 1193.3
(3)
P 		711.9
(-2.4)
P 		658.8
(-3)
P 		802.6
(-1.4)
P 		535
avr 1337.1
(3) 		655.4
(-3) 		682.2
(-2.8) 		828.4
(-1.5) 		682

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 974
1 2 3 4 5 6 range
A 1488.7
(3)
P 		1132.4
(0.5)
P 		623
(-3)
P 		863.3
(-1.3)
P 		992.9
(-0.4)
P 		797.4
(-1.8)
P 		866
B 1433.5
(3)
P 		1076.9
(0.7)
P 		515.2
(-3)
P 		972.1
(-0)
P 		812
(-1.1)
P 		689.1
(-1.9)
P 		918
C 1331.3
(3)
P 		1195.6
(1.6)
P 		809.7
(-2.2)
P 		886.3
(-1.4)
P 		868
(-1.6)
P 		729.6
(-3)
P 		602
avr 1417.8
(3) 		1135
(0.8) 		649.3
(-3) 		907.2
(-1) 		891
(-1.1) 		738.7
(-2.3) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 495.6
(3)
P 		105.1
(-3)
P 		190.3
(-1.7)
P 		124.7
(-2.7)
P 		391
B 464.6
(3)
P 		190.3
(-2.3)
P 		152.9
(-3)
P 		177.1
(-2.5)
P 		312
C 395
(3)
P 		204.7
(-1.4)
P 		229.6
(-0.8)
P 		135.3
(-3)
P 		260
avr 451.7
(3) 		166.7
(-2.6) 		190.9
(-2.1) 		145.7
(-3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 274.4
(0.1)
P 		402.8
(3)
P 		135.7
(-3)
P 		219
(-1.1)
P 		299.6
(0.7)
P 		194.1
(-1.7)
P 		267
B 498.8
(3)
P 		358.4
(0.7)
P 		125.1
(-3)
P 		257.5
(-0.9)
P 		329.9
(0.3)
P 		256.9
(-0.9)
P 		374
C 493.4
(3)
P 		364.8
(0.6)
P 		206.1
(-2.5)
P 		178.2
(-3)
P 		280.9
(-1)
P 		244.2
(-1.7)
P 		315
avr 422.2
(3) 		375.3
(1.9) 		155.6
(-3) 		218.2
(-1.6) 		303.5
(0.3) 		231.7
(-1.3) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20427
Sequence Type Exemplar sequence
Representative Public ID 1370047 NCBI
Target Description g1370047 /REP_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060107 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-8) (mec-8) mRNA, complete cds. 11/11 A 
F46A9.6.1 ENSEMBL cdna:known chromosome:CEL140:I:9449133:9452351:-1 gene:F46A9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9449134-9449440(-) 100.0 100.0
Public Domain and Genome References
Gene Title mecanosensory gene mec-8
Gene Symbol mec-8
Ensembl F46A9.6
Entrez Gene 172771 Entrez gene
SwissProt Q19018 EMBL-EBI
WormBase CE08260 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26159.1.S1_AT similar to RNA binding protein with multiple splicing 2 cfa
CANINE_2:CFAAFFX.26161.1.S1_AT similar to RNA binding protein with multiple splicing 2 cfa
CANINE_2:CFAAFFX.26161.1.S1_X_AT similar to RNA binding protein with multiple splicing 2 cfa
CHICKEN:GGA.2695.1.S1_AT RNA binding protein with multiple splicing 2 gga
HU35KSUBC:RC_AA303081_AT RNA binding protein with multiple splicing 2 hs
U133_X3P:HS.78293.0.A1_3P_AT RNA binding protein with multiple splicing 2 hs
HG-U133_PLUS_2:228802_AT RNA binding protein with multiple splicing 2 hs
HG-U133B:228802_AT RNA binding protein with multiple splicing 2 hs
HG-U95C:64751_AT RNA binding protein with multiple splicing 2 hs
HG-U95E:83594_AT RNA binding protein with multiple splicing 2 hs
MG-U74BV2:109167_AT RNA binding protein with multiple splicing 2 mm
MOE430A:1424008_A_AT RNA binding protein with multiple splicing 2 mm
MOUSE430A_2:1424008_A_AT RNA binding protein with multiple splicing 2 mm
MOUSE430_2:1424008_A_AT RNA binding protein with multiple splicing 2 mm
MU19KSUBB:TC34072_AT RNA binding protein with multiple splicing 2 (Rbpms2), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAB03111 Hypothetical protein F46A9.6 [Caenorhabditis elegans] emb|CAB02754.1| Hypothetical protein F46A9.6 [Caenorhabditis elegans] emb|CAA64867.1| mec-8 [Caenorhabditis elegans] ref|NP_492508.1| MEChanosensory abnormality family member (mec-8) [Caenorhabditis elegans] 1.0E-127
blast CAA64866 mec-8 [Caenorhabditis elegans] 1.0E-127
blast CAE60190 Hypothetical protein CBG03748 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.4E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:174034_AT
ttcattttactctcccaaaaaatcaccaaaaatcctttcggatctctttttattcgcatt
ttattttcctttctcttaatttttacaaaattcgaagtgtttgtaagcaccctacaggaa
cttctattgtcttgaccgtagagctcctttgcatcatatcttttctatttctgatttact
ctctgtaaatatatatcacgagagcttatccacctgtctgtctgtccgaacctgaaattt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTTTACTCTCCCAAAAAATCA 568 687 28 Antisense
ATCACCAAAAATCCTTTCGGATCTC 265 29 49 Antisense
TTCGGATCTCTTTTTATTCGCATTT 556 695 64 Antisense
GAAGTGTTTGTAAGCACCCTACAGG 452 335 121 Antisense
GCACCCTACAGGAACTTCTATTGTC 12 315 134 Antisense
TATTGTCTTGACCGTAGAGCTCCTT 618 665 152 Antisense
GTAGAGCTCCTTTGCATCATATCTT 603 455 165 Antisense
TGCATCATATCTTTTCTATTTCTGA 432 579 177 Antisense
TTCTATTTCTGATTTACTCTCTGTA 442 691 190 Antisense
TATATCACGAGAGCTTATCCACCTG 534 661 219 Antisense
TCTGTCTGTCCGAACCTGAAATTTT 281 609 244 Antisense
Sequence Source GenBank