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[174033_at]

Description g1717747 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 10      6grp_total > 16      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1472
1 2 3 4 range
A 1632.3
(3)
P
569.8
(-2)
P
400.8
(-2.8)
P
361.7
(-3)
P
1271
B 1683.6
(3)
P
305.2
(-2.6)
P
211.6
(-3)
P
585
(-1.5)
P
1472
C 1465.1
(3)
P
221.4
(-3)
P
569.3
(-1.3)
P
656.8
(-0.9)
P
1244
avr 1593.7
(3)
365.5
(-3)
393.9
(-2.9)
534.5
(-2.2)
1228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1944
1 2 3 4 5 6 range
A 2436.4
(3)
P
1617.1
(0.5)
P
549.8
(-2.8)
P
492.5
(-3)
P
883.3
(-1.8)
P
715.3
(-2.3)
P
1944
B 2318.3
(3)
P
1650.4
(0.7)
P
596.5
(-3)
P
671.3
(-2.7)
P
690.8
(-2.7)
P
843.7
(-2.1)
P
1722
C 2045.1
(3)
P
1603.6
(1.1)
P
1077.3
(-1.1)
P
764.8
(-2.4)
P
631.8
(-3)
P
740.1
(-2.5)
P
1413
avr 2266.6
(3)
1623.7
(0.6)
741.2
(-2.6)
642.9
(-3)
735.3
(-2.7)
766.4
(-2.5)
1624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 594.3
(3)
P
123.7
(-2.2)
P
104.8
(-2.4)
P
52.9
(-3)
P
541
B 536.9
(3)
P
75.4
(-2.7)
P
49
(-3)
P
124.7
(-2.1)
P
488
C 485
(3)
P
63.7
(-3)
P
198.4
(-1.1)
P
110.8
(-2.3)
P
421
avr 538.7
(3)
87.6
(-3)
117.4
(-2.6)
96.1
(-2.9)
451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 449.1
(1.3)
P
575.1
(3)
P
119.7
(-3)
P
124.9
(-2.9)
P
266.5
(-1.1)
P
174.2
(-2.3)
P
455
B 806.7
(3)
P
549.3
(0.7)
P
144.9
(-3)
P
177.8
(-2.7)
P
280.6
(-1.8)
P
314.6
(-1.5)
P
662
C 758
(3)
P
489.3
(0.3)
P
274.2
(-1.8)
P
153.8
(-3)
P
204.4
(-2.5)
P
247.7
(-2.1)
P
604
avr 671.3
(3)
537.9
(1.5)
179.6
(-2.7)
152.2
(-3)
250.5
(-1.9)
245.5
(-1.9)
519
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21601
Sequence Type Exemplar sequence
Representative Public ID 1717747 NCBI
Target Description g1717747 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026097(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_001026097 NCBI Caenorhabditis elegans UNCoordinated family member (unc-44) (unc-44) mRNA, complete cds. 11/11 None
B0350.2f ENSEMBL cdna:known chromosome:CEL140:IV:5975560:6004843:1 gene:B0350.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069268 1/11 Cross Hyb Matching Probes A 
SNAP00000022711 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022718 1/11 Cross Hyb Matching Probes None
F38E11.3 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177366 7 1 NM_001026095 175561_s_at (11), 176663_s_at (11)
NM_001026096 172153_x_at (11), 173125_s_at (11)
NM_001026097 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11), 174033_at (11), 181045_at (11)
NM_068497 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11)
NM_068500 172153_x_at (11), 173125_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6004433-6004824(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0350.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93447 Uncoordinated protein 44, isoform f [Caenorhabditis elegans] ref|NP_001021268.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] 0.0
blast AAB41827 AO13 ankyrin [Caenorhabditis elegans] 0.0
blast AAA93444 Uncoordinated protein 44, isoform c [Caenorhabditis elegans] ref|NP_500898.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] gb|AAB41828.1| AO66 ankyrin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 6.19999980926514
Pfam IPR000488 EMBL-EBI Death domain 1.0E-20
Pfam IPR002110 EMBL-EBI Ankyrin 1.7
Pfam IPR002110 EMBL-EBI Ankyrin 4.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-9
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-10
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.048
Pfam IPR002110 EMBL-EBI Ankyrin 3.5E-11
Pfam IPR002110 EMBL-EBI Ankyrin 2.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-9
Pfam IPR002110 EMBL-EBI Ankyrin 6.9E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-9
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-10
Pfam IPR002110 EMBL-EBI Ankyrin 3.3E-10
Pfam IPR002110 EMBL-EBI Ankyrin 8.0E-11
Pfam IPR002110 EMBL-EBI Ankyrin 7.5E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-11
Pfam IPR002110 EMBL-EBI Ankyrin 6.8E-7
Pfam IPR002110 EMBL-EBI Ankyrin 7.4E-11
Pfam IPR002110 EMBL-EBI Ankyrin 9.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.83
Pfam IPR000906 EMBL-EBI ZU5 domain 1.4E-61
Sequence
Target Sequence
>C. ELEGANS:174033_AT
aaatcgccccaattttcagacaatttcagaaatgtttcaagctttatctttaacttttca
tgttttaagctttcatctgcccaacttctaccaatatttcaatgattttctcagagttgt
tagccccaaacatcttctgaattattatagaaatttttttcagtaattaacttctaccat
ttcccatcatctttgttgtatttcgtttttagtctacgcggttttcctttttttttaatt
ttagagctctaaatgtaaaagttctttacaaaaaacaactagtcactctaaaaatgcgct
cccc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AAATCGCCCCAATTTTCAGACAATT 385 119 35 Antisense
AATGTTTCAAGCTTTATCTTTAACT 440 163 65 Antisense
TATCTTTAACTTTTCATGTTTTAAG 670 659 79 Antisense
TGTTTTAAGCTTTCATCTGCCCAAC 704 559 95 Antisense
ATTTTCTCAGAGTTGTTAGCCCCAA 76 15 139 Antisense
TTAGCCCCAAACATCTTCTGAATTA 645 681 154 Antisense
TAATTAACTTCTACCATTTCCCATC 497 633 198 Antisense
CATCATCTTTGTTGTATTTCGTTTT 425 213 219 Antisense
TGTATTTCGTTTTTAGTCTACGCGG 212 561 231 Antisense
TACAAAAAACAACTAGTCACTCTAA 492 639 301 Antisense
TAGTCACTCTAAAAATGCGCTCCCC 110 655 314 Antisense
Sequence Source GenBank