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[174032_s_at]

Description g1054691 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 47      6grp_cgc > 03      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 424.2
(3)
P 		226.4
(-2.1)
P 		192.6
(-3)
P 		228.6
(-2.1)
P 		232
B 593.2
(3)
P 		260
(-1.4)
P 		143.4
(-3)
P 		210.9
(-2.1)
P 		450
C 452.3
(3)
P 		256.4
(-2.4)
P 		295.1
(-1.3)
P 		233
(-3)
P 		219
avr 489.9
(3) 		247.6
(-2.2) 		210.4
(-3) 		224.2
(-2.7) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 413.8
(3)
P 		351.9
(1.7)
P 		217.6
(-1)
P 		201.7
(-1.4)
P 		336
(1.4)
P 		121.7
(-3)
P 		292
B 566.1
(3)
P 		511.1
(2)
P 		220.5
(-3)
P 		279.3
(-2)
P 		292.2
(-1.8)
P 		261.8
(-2.3)
P 		346
C 481.9
(3)
P 		410
(1.6)
P 		240.9
(-1.7)
P 		272.1
(-1.1)
P 		248.9
(-1.5)
P 		172.9
(-3)
P 		309
avr 487.3
(3) 		424.3
(1.7) 		226.3
(-2.2) 		251
(-1.7) 		292.4
(-0.9) 		185.5
(-3) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 154.5
(3)
P 		49.1
(-2.2)
P 		50.3
(-2.2)
P 		33.5
(-3)
P 		121
B 189.2
(3)
P 		64.2
(-1.8)
P 		33.2
(-3)
P 		44.9
(-2.6)
P 		156
C 149.7
(3)
P 		73.7
(-1.1)
P 		102.9
(0.5)
P 		39.3
(-3)
P 		110
avr 164.5
(3) 		62.3
(-1.9) 		62.1
(-1.9) 		39.2
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 76.3
(-0.1)
P 		125.2
(3)
P 		47.4
(-1.9)
P 		51.2
(-1.6)
P 		101.4
(1.5)
P 		29.6
(-3)
P 		96
B 197
(3)
P 		170.1
(1.9)
P 		53.5
(-3)
P 		74
(-2.1)
P 		118.7
(-0.3)
P 		97.6
(-1.2)
P 		144
C 178.6
(3)
P 		125.1
(0.4)
P 		61.3
(-2.7)
P 		54.7
(-3)
P 		80.6
(-1.7)
P 		57.9
(-2.8)
P 		124
avr 150.6
(3) 		140.1
(2.3) 		54.1
(-3) 		60
(-2.6) 		100.2
(-0.1) 		61.7
(-2.5) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174032_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22254
Sequence Type Exemplar sequence
Representative Public ID 1054691 NCBI
Target Description g1054691 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029416(11), NM_001029417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029416 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-2) (lin-2) mRNA, complete cds. 11/11 None
NM_001029417 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-2) (lin-2) mRNA, complete cds. 11/11 None
F17E5.1a ENSEMBL cdna:known chromosome:CEL140:X:12399439:12413946:-1 gene:F17E5.1 11/11 A 
F17E5.1b ENSEMBL cdna:known chromosome:CEL140:X:12399439:12405782:-1 gene:F17E5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12399515-12399795(-) 100.0 100.0
Public Domain and Genome References
Ensembl F17E5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90760 Hypothetical protein F17E5.1a [Caenorhabditis elegans] emb|CAA63314.1| LIN-2A [Caenorhabditis elegans] ref|NP_001024587.1| abnormal cell LINeage family member (lin-2) [Caenorhabditis elegans] sp|P54936|LIN2_CAEEL Abnormal cell lineage protein 2 (Protein lin-2) 0.0
blast T21073 hypothetical protein F17E5.1a - Caenorhabditis elegans 0.0
blast CAE57253 Hypothetical protein CBG00133 [Caenorhabditis briggsae] 0.0
blast CAA90759 Hypothetical protein F17E5.1b [Caenorhabditis elegans] emb|CAA63315.1| LIN-2B [Caenorhabditis elegans] ref|NP_001024588.1| abnormal cell LINeage family member (lin-2) [Caenorhabditis elegans] 0.0
blast T21072 hypothetical protein F17E5.1b - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.8 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; DdMLCK 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.7E-22
Pfam IPR001452 EMBL-EBI SH3 6.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-52
Pfam IPR004172 EMBL-EBI L27 domain 3.4E-12
Pfam IPR004172 EMBL-EBI L27 domain 3.8E-16
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.6E-62
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.7E-22
Pfam IPR001452 EMBL-EBI SH3 6.8E-5
Pfam IPR004172 EMBL-EBI L27 domain 3.8E-16
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.6E-62
Sequence
Target Sequence 
>C. ELEGANS:174032_S_AT
tatttggatcaaccctgtagtttttacgatctcaatttttaaatcgttattcagttattc
gttttttcacacttctgggtatatttgttctcgagcgtaggatatattttccttttatct
atatttttaccctgcatttttcctaataactggagccaaatagtatgtttcaattcttca
attgctattttgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTGGATCAACCCTGTAGTTTTT 379 661 63 Antisense
TAAATCGTTATTCAGTTATTCGTTT 622 631 102 Antisense
TTCGTTTTTTCACACTTCTGGGTAT 516 691 120 Antisense
CTGGGTATATTTGTTCTCGAGCGTA 248 239 137 Antisense
GTTCTCGAGCGTAGGATATATTTTC 266 443 149 Antisense
GATATATTTTCCTTTTATCTATATT 158 427 163 Antisense
TTATCTATATTTTTACCCTGCATTT 608 679 177 Antisense
TTACCCTGCATTTTTCCTAATAACT 255 681 189 Antisense
GCATTTTTCCTAATAACTGGAGCCA 205 307 196 Antisense
GGAGCCAAATAGTATGTTTCAATTC 158 523 214 Antisense
AATTCTTCAATTGCTATTTTGTTTT 621 175 234 Antisense
Sequence Source GenBank