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[174031_at] homeobox

Description g2605703 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 79      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 168.7
(3)
P 		104.6
(-3)
P 		128
(-0.8)
P 		145.8
(0.9)
P 		64
B 173.3
(3)
P 		141.1
(1)
P 		77.4
(-3)
P 		125.6
(0)
P 		96
C 150.1
(-1.8)
P 		163.8
(-1.2)
M 		124.7
(-3)
P 		253.4
(3)
P 		129
avr 164
(2) 		136.5
(-0.6) 		110
(-3) 		174.9
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 102.6
(-2.4)
P 		216.3
(3)
P 		88.8
(-3)
P 		108.2
(-2.1)
P 		136.9
(-0.7)
P 		134.3
(-0.9)
P 		128
B 141.4
(0.9)
P 		142.7
(1)
P 		148.5
(1.2)
P 		52.9
(-3)
P 		109
(-0.5)
P 		189.1
(3)
P 		136
C 130.7
(0.6)
P 		90.8
(-2.7)
P 		147.5
(2.1)
P 		86.9
(-3)
P 		142.1
(1.6)
P 		158.9
(3)
P 		72
avr 124.9
(0.2) 		149.9
(2.2) 		128.3
(0.5) 		82.7
(-3) 		129.3
(0.6) 		160.8
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 61.4
(3)
P 		22.7
(-2.8)
P 		33.5
(-1.2)
P 		21.3
(-3)
P 		40
B 55.3
(3)
P 		34.8
(-0.3)
P 		17.9
(-3)
P 		26.8
(-1.6)
P 		37
C 49.7
(3)
P 		47.1
(0.8)
M 		43.4
(-2.4)
P 		42.7
(-3)
P 		7
avr 55.5
(3) 		34.9
(-1.9) 		31.6
(-2.7) 		30.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 18.9
(-3)
P 		76.9
(3)
P 		19.3
(-3)
P 		27.4
(-2.1)
P 		41.3
(-0.7)
P 		32.7
(-1.6)
P 		58
B 49.2
(0.7)
P 		47.5
(0.6)
P 		36.1
(-0.7)
P 		14
(-3)
P 		44.3
(0.2)
P 		70.5
(3)
P 		57
C 48.5
(2.2)
P 		27.7
(-1.3)
P 		37.5
(0.4)
P 		17.5
(-3)
P 		46
(1.8)
P 		53.2
(3)
P 		36
avr 38.9
(0.6) 		50.7
(2.7) 		31
(-0.9) 		19.6
(-3) 		43.9
(1.5) 		52.1
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22408
Sequence Type Exemplar sequence
Representative Public ID 2605703 NCBI
Target Description g2605703 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075940(11), AF023470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075940 NCBI Caenorhabditis elegans T26C11.6 (homeobox) mRNA, complete cds. 11/11 A 
AF023470 NCBI Caenorhabditis elegans CEH-21 (ceh-21) mRNA, partial cds. 11/11 A 
T26C11.6 ENSEMBL cdna:known chromosome:CEL140:X:1849627:1852730:-1 gene:T26C11.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1849695-1849982(-) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox
Gene Symbol ceh-21
Ensembl T26C11.6
Entrez Gene 180504 Entrez gene
SwissProt Q22811 EMBL-EBI
WormBase CE29823 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508341 T26C11.6 [Caenorhabditis elegans] gb|AAC48216.2| C.elegans homeobox protein 21 [Caenorhabditis elegans] emb|CAD20808.1| CEH-21 protein [Caenorhabditis elegans] sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 0.0
blast T28912 probable homeobox protein - Caenorhabditis elegans 0.0
blast NP_508341 T26C11.6 [Caenorhabditis elegans] gb|AAC48216.2| C.elegans homeobox protein 21 [Caenorhabditis elegans] emb|CAD20808.1| CEH-21 protein [Caenorhabditis elegans] sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 9.0E-78
blast AAB86814 CEH-21 [Caenorhabditis elegans] 9.0E-78
blast T28912 probable homeobox protein - Caenorhabditis elegans 9.0E-78
blast AAB86814 CEH-21 [Caenorhabditis elegans] 5.0E-77
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 9.99999974737875E-6
Pfam IPR001356 EMBL-EBI Homeobox 1.8E-8
Pfam IPR003350 EMBL-EBI Homeodomain protein CUT 3.6E-55
Pfam IPR001356 EMBL-EBI Homeobox 1.8E-8
Pfam IPR003350 EMBL-EBI Homeodomain protein CUT 2.2E-34
Sequence
Target Sequence 
>C. ELEGANS:174031_AT
gtgtgtcatttttgaagttctctcacaggttttaccccttttctactatccatctctttg
cgttattctgaaattttgttgagcacagtatagattagttatactcctaatatcaataat
ctcaataatccaaaaagctaaaaattgatctactctcttgttgtcttttctctttttatt
gtcttatcacgtttttgaccgttccagctcaagcattccagctcaagcattccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGTCATTTTTGAAGTTCTCTCA 688 487 23 Antisense
TGAAGTTCTCTCACAGGTTTTACCC 312 573 35 Antisense
TACTATCCATCTCTTTGCGTTATTC 700 645 66 Antisense
CCATCTCTTTGCGTTATTCTGAAAT 261 271 72 Antisense
TATACTCCTAATATCAATAATCTCA 541 659 122 Antisense
ATTGATCTACTCTCTTGTTGTCTTT 489 5 166 Antisense
GTCTTTTCTCTTTTTATTGTCTTAT 484 469 185 Antisense
CTCTTTTTATTGTCTTATCACGTTT 645 229 192 Antisense
TTATCACGTTTTTGACCGTTCCAGC 507 679 206 Antisense
AGCTCAAGCATTCCAGCTCAAGCAT 564 79 228 Antisense
AAGCATTCCAGCTCAAGCATTCCAT 705 149 233 Antisense
Sequence Source GenBank