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[174030_at]

Description g7899271 /REP_DB=GenBank Identifier /CHR=5 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1201
1 2 3 4 range
A 1959.5
(3)
P 		839.3
(-2.6)
P 		1246.3
(-0.6)
P 		758.4
(-3)
P 		1201
B 1806.8
(3)
P 		1353.6
(-0.4)
P 		1578.2
(1.3)
P 		1001.9
(-3)
P 		805
C 1767.6
(3)
P 		1421.8
(-1.2)
P 		1439.7
(-1)
P 		1276.9
(-3)
P 		491
avr 1844.6
(3) 		1204.9
(-1.6) 		1421.4
(-0.1) 		1012.4
(-3) 		832

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1944
1 2 3 4 5 6 range
A 2518.6
(3)
P 		1432.6
(-0.8)
P 		1181
(-1.7)
P 		806.4
(-3)
P 		1717.9
(0.2)
P 		1253.9
(-1.4)
P 		1712
B 1840.1
(3)
P 		1619.8
(2)
P 		574.3
(-3)
P 		1679.3
(2.2)
P 		898.1
(-1.5)
P 		1338.7
(0.6)
P 		1266
C 1394
(2.4)
P 		1463.2
(3)
P 		1013.9
(-1.2)
P 		824
(-3)
P 		957.1
(-1.8)
P 		1457.9
(3)
P 		639
avr 1917.6
(3) 		1505.2
(0.5) 		923.1
(-3) 		1103.2
(-1.9) 		1191
(-1.4) 		1350.2
(-0.4) 		995
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 713.4
(3)
P 		182.2
(-2.3)
P 		325.8
(-0.9)
P 		111
(-3)
P 		602
B 576.2
(3)
P 		334.3
(-1)
P 		365.7
(-0.5)
P 		213.5
(-3)
P 		363
C 585.1
(3)
P 		408.8
(0.1)
P 		501.8
(1.6)
P 		215.3
(-3)
P 		370
avr 624.9
(3) 		308.4
(-1.3) 		397.8
(-0.1) 		179.9
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 464.3
(2)
P 		509.5
(2.8)
P 		257.2
(-2)
P 		204.5
(-3)
P 		518.4
(3)
P 		305.3
(-1.1)
P 		314
B 640.3
(3)
P 		539.2
(1.8)
P 		139.5
(-3)
P 		444.8
(0.7)
P 		364.9
(-0.3)
P 		499.2
(1.3)
P 		501
C 516.7
(3)
P 		446.5
(1.8)
P 		258
(-1.4)
P 		165.7
(-3)
P 		309.7
(-0.5)
P 		488
(2.5)
P 		351
avr 540.4
(3) 		498.4
(2.2) 		218.2
(-3) 		271.7
(-2) 		397.7
(0.3) 		430.8
(1) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21673
Sequence Type Exemplar sequence
Representative Public ID 7899271 NCBI
Target Description g7899271 /REP_DB=GenBank Identifier /CHR=5 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028679 NCBI Caenorhabditis elegans LEThal family member (let-413) (let-413) mRNA, complete cds. 11/11 None
F26D11.11a ENSEMBL cdna:known chromosome:CEL140:V:7975515:7980365:-1 gene:F26D11.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179171 2 1 NM_001028679 174030_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7975535-7975874(-) 94.99 100.0
Public Domain and Genome References
Ensembl F26D11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17752 Lethal protein 413, isoform a [Caenorhabditis elegans] emb|CAB91651.1| LET-413 protein [Caenorhabditis elegans] ref|NP_001023850.1| LEThal family member (let-413) [Caenorhabditis elegans] 0.0
blast AAT81195 Lethal protein 413, isoform b [Caenorhabditis elegans] ref|NP_001023851.1| LEThal family member (let-413) [Caenorhabditis elegans] sp|O61967|LAP1_CAEEL Lap1 protein (Lethal protein 413) 0.0
blast CAE64020 Hypothetical protein CBG08615 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.2E-17
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.087
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 3.9E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0032
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.01
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.2
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.11
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 7.5E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.28
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0074
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0018
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.0E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.057
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Sequence
Target Sequence 
>C. ELEGANS:174030_AT
acatttcatgtttctattatttcttgatttcatgtttcgtgtctcattttacactaatca
aactgcaacaaaaaataatcaaacaatcatttccatattctttctctcccactcaaaaat
acaggcctcaattcaaaagttgtgattactctccctttgttgttaattgtttttattttt
gtcattgatttacccaactctcatgagctcacacaacattcgtacacttttcctgcttca
atacttttgggctttacttctaattgtaagtatctttttccactgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTTCATGTTTCTATTATTTCTT 559 105 14 Antisense
GATTTCATGTTTCGTGTCTCATTTT 171 429 39 Antisense
TCTTTCTCTCCCACTCAAAAATACA 687 615 112 Antisense
AAAGTTGTGATTACTCTCCCTTTGT 240 123 149 Antisense
TACTCTCCCTTTGTTGTTAATTGTT 337 645 160 Antisense
GTCATTGATTTACCCAACTCTCATG 28 467 194 Antisense
AACTCTCATGAGCTCACACAACATT 277 141 209 Antisense
CACAACATTCGTACACTTTTCCTGC 139 195 225 Antisense
TACACTTTTCCTGCTTCAATACTTT 407 643 236 Antisense
TCAATACTTTTGGGCTTTACTTCTA 359 627 251 Antisense
TGTAAGTATCTTTTTCCACTGTTTT 503 559 278 Antisense
Sequence Source GenBank