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[174029_at]

Description g5360181 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 41      6grp_total > 19      4grp_total > 09      6grp_cgc > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2140
1 2 3 4 range
A 301.9
(-3)
P 		709.1
(-1.8)
P 		525.1
(-2.3)
P 		2350.4
(3)
P 		2049
B 210.9
(-3)
P 		564.5
(-1.9)
P 		426
(-2.3)
P 		2173.8
(3)
P 		1963
C 265.8
(-3)
P 		495.7
(-2.3)
P 		476.8
(-2.3)
P 		2183.7
(3)
P 		1918
avr 259.5
(-3) 		589.8
(-2) 		476
(-2.3) 		2236
(3) 		1977

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 1169.9
(3)
P 		594.6
(-1.8)
P 		549.1
(-2.2)
P 		738.3
(-0.6)
P 		879.6
(0.6)
P 		447.8
(-3)
P 		722
B 1140.3
(3)
P 		658.5
(-1.7)
P 		530.1
(-3)
P 		956.9
(1.2)
P 		753.7
(-0.8)
P 		564
(-2.7)
P 		610
C 900.5
(3)
P 		656.2
(-0.4)
P 		472.4
(-3)
P 		847.5
(2.3)
P 		731.2
(0.6)
P 		504.2
(-2.6)
P 		428
avr 1070.2
(3) 		636.4
(-1.6) 		517.2
(-2.9) 		847.6
(0.6) 		788.2
(0) 		505.3
(-3) 		565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 109.9
(-3)
P 		153.9
(-1.9)
P 		137.3
(-2.3)
P 		344.1
(3)
P 		234
B 67.3
(-3)
P 		139.4
(-1.9)
P 		98.7
(-2.5)
P 		463.2
(3)
P 		396
C 88
(-3)
P 		142.5
(-1.8)
P 		166.2
(-1.3)
P 		368.2
(3)
P 		280
avr 88.4
(-3) 		145.3
(-1.9) 		134.1
(-2.1) 		391.8
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 215.7
(1.1)
P 		211.5
(0.9)
P 		119.6
(-2.6)
P 		187.3
(0)
P 		265.4
(3)
P 		109
(-3)
P 		156
B 396.8
(3)
P 		219.2
(-1)
P 		128.7
(-3)
P 		253.5
(-0.2)
P 		306.2
(1)
P 		210.3
(-1.2)
P 		268
C 333.8
(3)
P 		200.2
(-0.8)
P 		120.2
(-3)
P 		170.4
(-1.6)
P 		236.6
(0.3)
P 		168.8
(-1.6)
P 		214
avr 315.4
(3) 		210.3
(-0.3) 		122.8
(-3) 		203.7
(-0.5) 		269.4
(1.6) 		162.7
(-1.8) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22455
Sequence Type Exemplar sequence
Representative Public ID 5360181 NCBI
Target Description g5360181 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029739 NCBI Caenorhabditis elegans Pharyngeal Enhancer Binding family member (peb-1) (peb-1) mRNA, complete cds. 11/11 None
T14F9.4a.1 ENSEMBL cdna:known chromosome:CEL140:X:2215621:2218973:1 gene:T14F9.4 11/11 None
T14F9.4a.2 ENSEMBL cdna:known chromosome:CEL140:X:2215623:2218973:1 gene:T14F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180532 2 1 NM_001029739 174029_at (11), 188015_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2218619-2218900(+) 100.0 100.0
Public Domain and Genome References
Ensembl T14F9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91262 Pharyngeal enhancer binding protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024910.1| Pharyngeal Enhancer Binding family member (peb-1) [Caenorhabditis elegans] 1.0E-178
blast AAD42897 pharyngeal enhancer binding protein-1 [Caenorhabditis elegans] 1.0E-177
blast CAE68338 Hypothetical protein CBG14059 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 5.0E-30
Sequence
Target Sequence 
>C. ELEGANS:174029_AT
tccctccaactcattgtcgatatccagatttagtcaacataccaatacacagcttttttc
ttctttgtttgggattccaatactctcaataattctttcatttaaagcgggttgtggtga
aaatgcttctatgtcgtactcaatgcttgtttcctctcatccaaaagatattattttttg
ttttactcccagtttctcgttgcgttgcactgtgcaatcatttccaacgatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCAACTCATTGTCGATATCC 23 599 13 Antisense
GATATCCAGATTTAGTCAACATACC 484 425 31 Antisense
GTCAACATACCAATACACAGCTTTT 233 465 45 Antisense
CACAGCTTTTTTCTTCTTTGTTTGG 698 193 60 Antisense
GGGATTCCAATACTCTCAATAATTC 382 495 83 Antisense
GCGGGTTGTGGTGAAAATGCTTCTA 199 291 119 Antisense
AATGCTTCTATGTCGTACTCAATGC 66 165 134 Antisense
TGTCGTACTCAATGCTTGTTTCCTC 21 559 144 Antisense
CTTGTTTCCTCTCATCCAAAAGATA 416 217 158 Antisense
TTTCTCGTTGCGTTGCACTGTGCAA 686 671 205 Antisense
CTGTGCAATCATTTCCAACGATCCC 33 241 222 Antisense
Sequence Source GenBank