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[174024_at]

Description g1934846 /REP_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 46      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 77      6grp_total > 46      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 36      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 1298.7
(3)
P 		761.4
(-3)
P 		1047.9
(0.2)
P 		1026.5
(-0)
P 		537
B 1197.5
(2.8)
P 		1078.5
(-3)
P 		1172.6
(1.6)
P 		1202.2
(3)
P 		124
C 1295.7
(3)
P 		1141.1
(-1)
P 		1137.7
(-1.1)
P 		1063.3
(-3)
P 		232
avr 1264
(3) 		993.7
(-3) 		1119.4
(-0.2) 		1097.3
(-0.7) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 661
1 2 3 4 5 6 range
A 1448.5
(0.6)
P 		1419
(0.3)
P 		1191.7
(-2.7)
P 		1168.1
(-3)
P 		1226.6
(-2.2)
P 		1630.3
(3)
P 		462
B 1629.5
(3)
P 		1357.9
(0.5)
P 		1564.3
(2.4)
P 		1524.8
(2)
P 		969.8
(-3)
P 		1546
(2.2)
P 		660
C 1511.7
(2.7)
P 		1316.5
(0.4)
P 		1404.2
(1.4)
P 		1518.7
(2.7)
P 		1027.6
(-3)
P 		1541.3
(3)
P 		514
avr 1529.9
(2.5) 		1364.5
(0.5) 		1386.7
(0.8) 		1403.9
(1) 		1074.7
(-3) 		1572.5
(3) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 472.9
(3)
P 		165.3
(-2.7)
P 		273.9
(-0.7)
P 		150.3
(-3)
P 		323
B 381.9
(3)
P 		266.4
(-2.5)
P 		271.7
(-2.3)
P 		256.2
(-3)
P 		126
C 428.9
(3)
P 		328.1
(0.6)
P 		396.5
(2.2)
P 		179.3
(-3)
P 		250
avr 427.9
(3) 		253.3
(-1.5) 		314
(0.1) 		195.3
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 267
(-2.8)
P 		504.7
(3)
P 		259.5
(-3)
P 		296.3
(-2.1)
P 		370.1
(-0.3)
P 		396.9
(0.4)
P 		245
B 567
(2.7)
P 		452
(-0.8)
P 		379.9
(-3)
P 		403.9
(-2.3)
P 		394
(-2.6)
P 		576.5
(3)
P 		197
C 560.3
(3)
P 		401.7
(-0.7)
P 		357.4
(-1.8)
P 		305.4
(-3)
P 		332.5
(-2.4)
P 		516
(2)
P 		255
avr 464.8
(1.8) 		452.8
(1.4) 		332.3
(-3) 		335.2
(-2.9) 		365.5
(-1.8) 		496.5
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20208
Sequence Type Exemplar sequence
Representative Public ID 1934846 NCBI
Target Description g1934846 /REP_DB=GenBank Identifier /CHR=1 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060936 NCBI Caenorhabditis elegans TOPoisomerase family member (top-1) (top-1) mRNA, complete cds. 11/11 A 
M01E5.5a ENSEMBL cdna:known chromosome:CEL140:I:13300633:13305672:1 gene:M01E5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
266847 2 1 NM_060936 174024_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13305151-13305574(+) 99.06 99.06
Public Domain and Genome References
Ensembl M01E5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA65537 DNA topoisomerase; DNA topoisomerase I [Caenorhabditis elegans] 0.0
blast CAB07639 Hypothetical protein M01E5.5b [Caenorhabditis elegans] ref|NP_001021578.1| TOPoisomerase family member (top-1) [Caenorhabditis elegans] 0.0
blast CAB07640 Hypothetical protein M01E5.5a [Caenorhabditis elegans] ref|NP_493337.1| TOPoisomerase family member (top-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.8.Eukaryotic DNA topoisomerase I, dispensable insert domain All alpha proteins; Long alpha-hairpin; Eukaryotic DNA topoisomerase I, dispensable insert domain; Eukaryotic DNA topoisomerase I, dispensable insert domain 0.439999997615814
Pfam IPR008336 EMBL-EBI Eukaryotic DNA topoisomerase I, DNA binding 1.0E-126
Pfam IPR001631 EMBL-EBI Eukaryotic-like DNA topoisomerase I 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174024_AT
cctcttatttctccatttcaatcaaatatctctaaatatcttgaaatttccaagtttcta
tagttatttgctcttcatgtctaacgttttctttctccccactcttctagtacatgtaat
ccattctatcatctcaaaaaaaaagaatcctaagatttttttagaattaccttcttattt
tgctccaattgctctaaaatatcgtgtgtagcctccttttgggtatgttcagactggaaa
ttagctattttcagccttaaaatgccccaatttcgtctttttttcttcattacccacatg
attagtcccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTTATTTCTCCATTTCAATCAA 647 267 25 Antisense
CTATAGTTATTTGCTCTTCATGTCT 124 225 82 Antisense
TTCATGTCTAACGTTTTCTTTCTCC 313 689 98 Antisense
TCCCCACTCTTCTAGTACATGTAAT 347 597 120 Antisense
TGTAATCCATTCTATCATCTCAAAA 396 559 139 Antisense
AGAATTACCTTCTTATTTTGCTCCA 573 75 187 Antisense
AAAATATCGTGTGTAGCCTCCTTTT 661 133 220 Antisense
GCCTCCTTTTGGGTATGTTCAGACT 114 283 235 Antisense
GCCTTAAAATGCCCCAATTTCGTCT 235 281 278 Antisense
TCTTTTTTTCTTCATTACCCACATG 432 615 300 Antisense
ATTACCCACATGATTAGTCCCAAGA 402 7 313 Antisense
Sequence Source GenBank