[Home] | [Total List]

[174021_at] zinc finger DNA-binding protein

Description g10198000 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 502
1 2 3 4 range
A 837.7
(3)
P 		479.4
(-2.4)
P 		443
(-3)
P 		824.8
(2.8)
P 		395
B 745.4
(1.6)
P 		397
(-3)
P 		441.4
(-2.4)
P 		850.9
(3)
P 		454
C 815.1
(3)
P 		349.2
(-3)
P 		653.8
(0.9)
P 		649.1
(0.9)
P 		466
avr 799.4
(3) 		408.5
(-3) 		512.7
(-1.4) 		774.9
(2.6) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 502.5
(3)
P 		471.5
(2.2)
P 		309.8
(-2.2)
P 		280.2
(-3)
P 		313.1
(-2.1)
P 		312.2
(-2.1)
P 		222
B 453.5
(3)
P 		452.7
(3)
P 		302.1
(-1.3)
P 		240.5
(-3)
P 		243.9
(-2.9)
P 		386.3
(1.1)
P 		213
C 643.3
(3)
P 		440.8
(-0.5)
P 		378.5
(-1.6)
P 		307
(-2.9)
P 		300
(-3)
P 		313.1
(-2.8)
P 		343
avr 533.1
(3) 		455
(1.2) 		330.1
(-1.7) 		275.9
(-3) 		285.7
(-2.8) 		337.2
(-1.6) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 305
(3)
P 		104.1
(-3)
P 		115.8
(-2.7)
P 		120.7
(-2.5)
P 		201
B 237.7
(3)
P 		98.1
(-3)
P 		102.3
(-2.8)
P 		181.3
(0.6)
P 		140
C 269.8
(3)
P 		100.4
(-3)
P 		227.9
(1.5)
P 		109.5
(-2.7)
P 		169
avr 270.8
(3) 		100.9
(-3) 		148.7
(-1.3) 		137.2
(-1.7) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 92.6
(-1.5)
P 		167.7
(3)
P 		67.5
(-3)
P 		71.1
(-2.8)
P 		94.5
(-1.4)
P 		76
(-2.5)
P 		100
B 157.8
(3)
P 		150.7
(2.5)
P 		73.4
(-2.4)
P 		63.7
(-3)
P 		99.1
(-0.7)
P 		144.1
(2.1)
P 		94
C 238.4
(3)
P 		134.5
(-0.5)
P 		96.3
(-1.8)
P 		61.7
(-3)
P 		97.1
(-1.8)
P 		104.8
(-1.5)
P 		177
avr 162.9
(3) 		151
(2.3) 		79.1
(-2.2) 		65.5
(-3) 		96.9
(-1.1) 		108.3
(-0.4) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22165
Sequence Type Exemplar sequence
Representative Public ID 10198000 NCBI
Target Description g10198000 /REP_DB=GenBank Identifier /CHR=X /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076396(11), AF273786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076396 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-45) (nhr-45) mRNA, complete cds. 11/11 None
AF273786 NCBI Caenorhabditis elegans clone yk347g3 nuclear receptor NHR-45 (nhr-45) pseudogene, mRNA sequence. 11/11 A 
F16H11.5 ENSEMBL cdna:known chromosome:CEL140:X:4656404:4660332:-1 gene:F16H11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4656478-4656751(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger DNA-binding protein
Gene Symbol nhr-45
Ensembl F16H11.5
Entrez Gene 180738 Entrez gene
SwissProt Q19496 EMBL-EBI
WormBase CE33052 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98005 Nuclear hormone receptor family protein 45 [Caenorhabditis elegans] ref|NP_508797.2| Nuclear Hormone Receptor family member (nhr-45) [Caenorhabditis elegans] 0.0
blast CAE68628 Hypothetical protein CBG14515 [Caenorhabditis briggsae] 0.0
blast CAB03299 Hypothetical protein T06C12.7 [Caenorhabditis elegans] ref|NP_506968.1| Nuclear Hormone Receptor family member (nhr-84) [Caenorhabditis elegans] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.8E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174021_AT
aatctaaatccagttatcaccagtcattcaatttatgtgtattataaagtgcctaaaaat
gtgaatcttcatttttcggcacgtcgtcacctctgacaaaactcatctttgtagtatagg
aaacaaaaatgtacttgatttcatttaaaaatcccaaggtctttatctacagcccctcca
aaattttcaatttttttcactatctgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTAAATCCAGTTATCACCAGTC 655 169 20 Antisense
ATCCAGTTATCACCAGTCATTCAAT 134 41 27 Antisense
ACCAGTCATTCAATTTATGTGTATT 85 87 38 Antisense
TATGTGTATTATAAAGTGCCTAAAA 93 655 53 Antisense
AGTGCCTAAAAATGTGAATCTTCAT 370 59 67 Antisense
TGAATCTTCATTTTTCGGCACGTCG 204 575 81 Antisense
CACGTCGTCACCTCTGACAAAACTC 573 199 99 Antisense
GTCACCTCTGACAAAACTCATCTTT 133 467 105 Antisense
AAAACTCATCTTTGTAGTATAGGAA 403 129 117 Antisense
ATCCCAAGGTCTTTATCTACAGCCC 3 39 170 Antisense
TCAATTTTTTTCACTATCTGTTTTT 118 635 206 Antisense
Sequence Source GenBank