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[174019_s_at]

Description g10198099 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 03      6grp_cgc > 99      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 41.3
(-2.7)
P 		43.8
(-2.6)
A 		33.9
(-3)
A 		197.5
(3)
P 		164
B 62.3
(-2.1)
P 		44
(-3)
A 		54.2
(-2.5)
P 		162.9
(3)
P 		119
C 92.5
(-1)
P 		50.8
(-3)
A 		61.5
(-2.5)
P 		173.4
(3)
P 		123
avr 65.4
(-2.1) 		46.2
(-3) 		49.9
(-2.8) 		177.9
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 67.1
(-3)
A 		80.4
(-1.7)
P 		126.6
(3)
P 		107.8
(1.1)
P 		120.7
(2.4)
P 		67.3
(-3)
P 		60
B 65.7
(-3)
P 		95.5
(-1)
P 		100
(-0.7)
P 		109.8
(-0)
P 		154.8
(3)
P 		121.5
(0.8)
P 		89
C 102.9
(0.8)
P 		130.8
(3)
P 		119.5
(2.1)
P 		55.9
(-3)
P 		102.6
(0.7)
P 		122.7
(2.4)
P 		75
avr 78.6
(-3) 		102.2
(-0) 		115.4
(1.7) 		91.2
(-1.4) 		126
(3) 		103.8
(0.2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 15
(-1.2)
P 		9.5
(-2.8)
A 		8.9
(-3)
A 		28.9
(3)
P 		20
B 19.9
(-0.7)
P 		10.9
(-3)
A 		12.6
(-2.6)
P 		34.7
(3)
P 		24
C 30.6
(3)
P 		14.6
(-3)
A 		21.4
(-0.5)
P 		29.2
(2.5)
P 		16
avr 21.8
(0.2) 		11.7
(-3) 		14.3
(-2.2) 		30.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 12.4
(-3)
A 		28.6
(1.1)
P 		27.6
(0.8)
P 		27.3
(0.7)
P 		36.4
(3)
P 		16.4
(-2)
P 		24
B 22.9
(-3)
P 		31.8
(-1.7)
P 		24.3
(-2.8)
P 		29.1
(-2.1)
P 		62.9
(3)
P 		45.3
(0.4)
P 		40
C 38.1
(2.4)
P 		39.9
(2.8)
P 		30.4
(0.9)
P 		11.2
(-3)
P 		33.2
(1.4)
P 		41.1
(3)
P 		30
avr 24.5
(-2.4) 		33.4
(0) 		27.4
(-1.6) 		22.5
(-3) 		44.2
(3) 		34.3
(0.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174019_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21630
Sequence Type Exemplar sequence
Representative Public ID 10198099 NCBI
Target Description g10198099 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067710 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-92) (nhr-92) mRNA, complete cds. 11/11 A 
GENEFINDER00000005550 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1620197:1633204:1 11/11 None
Y41D4B.8 ENSEMBL cdna:known chromosome:CEL140:IV:1620173:1623731:1 gene:Y41D4B.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005517 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1620255-1621348(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-92
Ensembl Y41D4B.8
Entrez Gene 176971 Entrez gene
SwissProt Q95Y07 EMBL-EBI
WormBase CE37567 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68482 Nuclear hormone receptor family protein 92 [Caenorhabditis elegans] ref|NP_500111.3| Nuclear Hormone Receptor family member (nhr-92) [Caenorhabditis elegans] 0.0
blast AAG15184 nuclear receptor NHR-92 [Caenorhabditis elegans] 0.0
blast AAL32242 Nuclear hormone receptor family protein 87 [Caenorhabditis elegans] ref|NP_500112.2| Nuclear Hormone Receptor family member (nhr-87) [Caenorhabditis elegans] 1.0E-170
blast CAE67969 Hypothetical protein CBG13575 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.8E-30
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.7E-21
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 7.0E-23
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-24
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.2E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:174019_S_AT
gcatgttcggcattttttcgtcgaaccgttgttcgtggccacgagtacaggtgtaagcag
atggaaaattgtctgattgtttcgacaattcgaaacatgtgcaaaaagtgtcgatacaca
aaatgcatattagtcggaatgaaacgcgagagtgttcaaaaatttcgagatgtctacgga
aaacgagagatcaccgtgaaaaactccacaaagactgcttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGTTCGGCATTTTTTCGTCGAA 188 311 29 Antisense
TCGGCATTTTTTCGTCGAACCGTTG 386 605 35 Antisense
TCGTCGAACCGTTGTTCGTGGCCAC 685 599 46 Antisense
GAACCGTTGTTCGTGGCCACGAGTA 659 345 51 Antisense
GTTGTTCGTGGCCACGAGTACAGGT 56 433 56 Antisense
GTGTCGATACACAAAATGCATATTA 287 487 136 Antisense
GTCGGAATGAAACGCGAGAGTGTTC 430 471 161 Antisense
AATTTCGAGATGTCTACGGAAAACG 310 165 189 Antisense
TGTCTACGGAAAACGAGAGATCACC 188 559 199 Antisense
GAGATCACCGTGAAAAACTCCACAA 258 397 215 Antisense
AAAACTCCACAAAGACTGCTTCTCC 446 131 228 Antisense
Sequence Source GenBank