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[174018_at]

Description g10197988 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 01      6grp_total > 26      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2846
1 2 3 4 range
A 3066.2
(2.2)
P 		1547.1
(-2.7)
P 		1452.5
(-3)
P 		3313.2
(3)
P 		1861
B 3211.6
(1.1)
P 		1356.6
(-2.8)
P 		1257.5
(-3)
P 		4103
(3)
P 		2846
C 2951.2
(1.2)
P 		1433.9
(-3)
P 		1435.7
(-3)
P 		3611.1
(3)
P 		2177
avr 3076.3
(1.4) 		1445.9
(-2.8) 		1381.9
(-3) 		3675.8
(3) 		2294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1874
1 2 3 4 5 6 range
A 2904
(3)
P 		1945.8
(-0.3)
P 		1463.5
(-2)
P 		1181.6
(-3)
P 		1280.1
(-2.7)
P 		1726.3
(-1.1)
P 		1722
B 2858.6
(3)
P 		2224.8
(0.8)
P 		1911
(-0.3)
P 		1337.7
(-2.3)
P 		1140.1
(-3)
P 		1703.7
(-1)
P 		1719
C 2271.7
(3)
P 		2066.7
(2)
P 		1521
(-0.6)
P 		1462.2
(-0.9)
P 		1030.3
(-3)
P 		1784.9
(0.6)
P 		1241
avr 2678.1
(3) 		2079.1
(0.6) 		1631.8
(-1.1) 		1327.2
(-2.3) 		1150.2
(-3) 		1738.3
(-0.7) 		1528
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 1116.4
(3)
P 		335.8
(-3)
P 		379.7
(-2.7)
P 		485
(-1.9)
P 		781
B 1024.2
(3)
P 		335
(-2.6)
P 		291.4
(-3)
P 		874.4
(1.8)
P 		733
C 976.9
(3)
P 		412.3
(-3)
P 		500.4
(-2.1)
P 		608.9
(-0.9)
P 		565
avr 1039.2
(3) 		361
(-3) 		390.5
(-2.7) 		656.1
(-0.4) 		678

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 701
1 2 3 4 5 6 range
A 535.3
(0.6)
P 		692
(3)
P 		318.7
(-2.7)
P 		299.7
(-3)
P 		386.3
(-1.7)
P 		420.3
(-1.2)
P 		392
B 994.6
(3)
P 		740.6
(0.6)
P 		464
(-2)
P 		354.3
(-3)
P 		463.2
(-2)
P 		635.3
(-0.4)
P 		640
C 842
(3)
P 		630.6
(0.7)
P 		387.1
(-2)
P 		294
(-3)
P 		333.4
(-2.6)
P 		597.5
(0.3)
P 		548
avr 790.6
(3) 		687.7
(1.7) 		389.9
(-2.1) 		316
(-3) 		394.3
(-2) 		551
(-0) 		475
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21383
Sequence Type Exemplar sequence
Representative Public ID 10197988 NCBI
Target Description g10197988 /REP_DB=GenBank Identifier /CHR=4 /FEA=Genomic Cluster
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171412(11), NM_001028074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171412 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-34) (nhr-34) mRNA, complete cds. 11/11 A 
NM_001028074 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-34) (nhr-34) mRNA, complete cds. 11/11 None
F58G6.5a ENSEMBL cdna:known chromosome:CEL140:IV:9664342:9667043:-1 gene:F58G6.5 11/11 A 
F58G6.5c ENSEMBL cdna:known chromosome:CEL140:IV:9664347:9672647:-1 gene:F58G6.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069315 1/11 Cross Hyb Matching Probes A 
SNAP00000020770 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020778 1/11 Cross Hyb Matching Probes None
F58G6.5b 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177800 3 2 NM_001028074 174018_at (11)
NM_171412 174018_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9664422-9664719(-) 100.0 100.0
Public Domain and Genome References
Ensembl F58G6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92467 Hypothetical protein F58G6.5a [Caenorhabditis elegans] ref|NP_741480.1| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast AAG15129 nuclear receptor NHR-34 [Caenorhabditis elegans] 0.0
blast CAE46689 Hypothetical protein F58G6.5c [Caenorhabditis elegans] emb|CAE46673.1| Hypothetical protein F58G6.5c [Caenorhabditis elegans] ref|NP_001023245.1| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast CAC70146 Hypothetical protein F58G6.5b [Caenorhabditis elegans] emb|CAC70099.2| Hypothetical protein F58G6.5b [Caenorhabditis elegans] ref|NP_501716.2| Nuclear Hormone Receptor family member (nhr-34) [Caenorhabditis elegans] 0.0
blast Q21006 Nuclear hormone receptor family member nhr-34 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:174018_AT
agtttccacatctcagtttttagaattcaagccatcattgcactagtcgtctagcttttt
ctacttatcaatgcataatctcgtcgtattctcgttgtacttaaattataaattttccgc
tgacattctctgcgatttctatcaaataccaatgtgataagtgctacagtattcagggac
atttcttcacgattcgctctccaattctcacacatcccaacgatgtttttcttttgccaa
tttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCCACATCTCAGTTTTTAGAA 611 61 20 Antisense
AAGCCATCATTGCACTAGTCGTCTA 168 149 48 Antisense
AGTCGTCTAGCTTTTTCTACTTATC 542 61 64 Antisense
ATGCATAATCTCGTCGTATTCTCGT 582 43 90 Antisense
CTCGTCGTATTCTCGTTGTACTTAA 243 231 99 Antisense
ATAAATTTTCCGCTGACATTCTCTG 582 23 127 Antisense
GACATTCTCTGCGATTTCTATCAAA 200 371 141 Antisense
AGTGCTACAGTATTCAGGGACATTT 685 57 179 Antisense
TCAGGGACATTTCTTCACGATTCGC 235 601 192 Antisense
AATTCTCACACATCCCAACGATGTT 412 177 222 Antisense
GATGTTTTTCTTTTGCCAATTTCCA 300 407 241 Antisense
Sequence Source GenBank