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[174016_at]

Description C46731 /REP_DB=TREMBL Accession /GB=C46731 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk424a4 : 5prime end, single read.
Cluster 6grp_total > 39      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 44.8
(-0.7)
A 		60.7
(0.5)
A 		15.7
(-3)
A 		91.9
(3)
P 		76
B 22.5
(-1.6)
A 		6.6
(-3)
A 		43.6
(0.3)
A 		74.2
(3)
P 		68
C 48.4
(0.1)
P 		21
(-3)
A 		20.9
(-3)
A 		73.5
(3)
A 		53
avr 38.6
(-1.7) 		29.4
(-2.7) 		26.7
(-3) 		79.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.1
(-3)
A 		38.4
(2.9)
A 		7.8
(-2.7)
A 		38.7
(3)
A 		29.8
(1.4)
A 		24.4
(0.4)
A 		33
B 43.6
(3)
P 		30.6
(0.6)
A 		18.6
(-1.7)
A 		11.7
(-3)
A 		31.5
(0.7)
P 		22
(-1.1)
M 		32
C 30.3
(1.7)
A 		24.8
(0.6)
A 		36.1
(3)
A 		8.3
(-3)
A 		22.9
(0.2)
A 		35.7
(2.9)
A 		28
avr 26.7
(0.6) 		31.3
(3) 		20.8
(-2.4) 		19.6
(-3) 		28.1
(1.4) 		27.4
(1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.3
(3)
A 		13.2
(1.5)
A 		4.1
(-3)
A 		13.5
(1.6)
P 		12
B 7.2
(-0.6)
A 		1.6
(-3)
A 		10.1
(0.6)
A 		15.8
(3)
P 		14
C 16
(3)
P 		6
(-3)
A 		7.3
(-2.2)
A 		12.4
(0.8)
A 		10
avr 13.2
(2.4) 		6.9
(-3) 		7.2
(-2.7) 		13.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-3)
A 		13.7
(3)
A 		1.7
(-2.7)
A 		9.8
(1.1)
A 		9
(0.8)
A 		5.9
(-0.7)
A 		13
B 15.2
(3)
P 		10.2
(0.5)
A 		4.5
(-2.3)
A 		3.1
(-3)
A 		12.8
(1.8)
P 		8.2
(-0.5)
M 		12
C 11.2
(2.6)
A 		7.6
(0.5)
A 		9.2
(1.4)
A 		1.7
(-3)
A 		7.4
(0.4)
A 		11.9
(3)
A 		10
avr 9.2
(1.6) 		10.5
(3) 		5.1
(-2.8) 		4.9
(-3) 		9.7
(2.1) 		8.7
(1.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20497
Sequence Type Exemplar sequence
Representative Public ID C46731 NCBI
Target Description C46731 /REP_DB=TREMBL Accession /GB=C46731 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk424a4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015035 ENSEMBL cdna:SNAP chromosome:CEL140:II:11747156:11747594:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11747072-11747374(+) 82.78 100.0
Sequence
Target Sequence 
>C. ELEGANS:174016_AT
cggcctgcgtgtgtggagcaacaacttctgctactgatcgatattttgcagcggcgatgg
cgggtagaagaagaagaaaagaagacgacgacggctgggggacgacgaccatcgtgttat
acacatccagtgcagcagcacgtcccctcaagtacggcgcaaaaacaacgccgatggcgg
cggcggcggcatcgttggaaggggagcgctttacttattaccaacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCCTGCGTGTGTGGAGCAACAAC 512 241 37 Antisense
CAACAACTTCTGCTACTGATCGATA 26 189 55 Antisense
GCTACTGATCGATATTTTGCAGCGG 290 301 66 Antisense
TTTGCAGCGGCGATGGCGGGTAGAA 52 667 81 Antisense
GAAAAGAAGACGACGACGGCTGGGG 310 353 112 Antisense
GGGGACGACGACCATCGTGTTATAC 266 497 134 Antisense
ACACATCCAGTGCAGCAGCACGTCC 377 111 157 Antisense
TCCCCTCAAGTACGGCGCAAAAACA 565 593 179 Antisense
AAACAACGCCGATGGCGGCGGCGGC 342 127 199 Antisense
CGGCGGCATCGTTGGAAGGGGAGCG 8 243 220 Antisense
GAGCGCTTTACTTATTACCAACAAT 74 387 240 Antisense
Sequence Source Affymetrix Proprietary Database