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[174014_s_at]

Description AU116026_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44A2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116026 /WB_GENE_ID=F44A2.6 /WP=CE04573 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:Q20383 protein_id:AAA83451.1; Caenorhabditis elegans cDNA clone:yk739g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 67      6grp_total > 08      4grp_total > 20      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1671
1 2 3 4 range
A 2080
(0.2)
P 		1843.5
(-0.9)
P 		1396.3
(-3)
P 		2664.5
(3)
P 		1268
B 2291.9
(-0.4)
P 		2084.9
(-1.3)
P 		1705.3
(-3)
P 		3053.3
(3)
P 		1348
C 2444.3
(0.3)
P 		1910.3
(-2)
P 		1665
(-3)
P 		3067.5
(3)
P 		1403
avr 2272.1
(0.1) 		1946.2
(-1.4) 		1588.9
(-3) 		2928.4
(3) 		1340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1353
1 2 3 4 5 6 range
A 2019.9
(1.1)
P 		1824
(-0.2)
P 		2292.5
(3)
P 		1874.4
(0.1)
P 		1419.5
(-3)
P 		1816.9
(-0.3)
P 		873
B 2772
(3)
P 		2042.9
(-1.1)
P 		2155
(-0.5)
P 		1797.4
(-2.5)
P 		1715.3
(-3)
P 		2045.9
(-1.1)
P 		1057
C 2294.1
(3)
P 		1767.1
(-3)
P 		1889.3
(-1.6)
P 		1853
(-2)
P 		1864.5
(-1.9)
P 		2139.1
(1.2)
P 		527
avr 2362
(3) 		1878
(-1.2) 		2112.3
(0.8) 		1841.6
(-1.5) 		1666.4
(-3) 		2000.6
(-0.1) 		696
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 757.3
(3)
P 		400.2
(-2.5)
P 		365
(-3)
P 		390
(-2.6)
P 		392
B 730.9
(3)
P 		514.9
(-0.9)
P 		395.2
(-3)
P 		650.6
(1.6)
P 		336
C 809.1
(3)
P 		549.2
(-2.3)
P 		580.3
(-1.7)
P 		517.2
(-3)
P 		292
avr 765.8
(3) 		488.1
(-2.2) 		446.8
(-3) 		519.3
(-1.6) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 372.4
(-3)
P 		648.7
(3)
P 		499.3
(-0.2)
P 		475.4
(-0.8)
P 		428.4
(-1.8)
P 		442.4
(-1.5)
P 		276
B 964.5
(3)
P 		680
(-0.5)
P 		523.3
(-2.4)
P 		476.1
(-3)
P 		696.9
(-0.3)
P 		762.9
(0.5)
P 		488
C 850.3
(3)
P 		539.2
(-0.9)
P 		480.9
(-1.6)
P 		372.6
(-3)
P 		603.3
(-0.1)
P 		716.1
(1.3)
P 		478
avr 729.1
(3) 		622.6
(0.8) 		501.2
(-1.8) 		441.4
(-3) 		576.2
(-0.2) 		640.5
(1.2) 		288
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25176
Sequence Type Exemplar sequence
Representative Public ID AU116026 NCBI
Target Description AU116026_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44A2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116026 /WB_GENE_ID=F44A2.6 /WP=CE04573 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:Q20383 protein_id:AAA83451.1; Caenorhabditis elegans cDNA clone:yk739g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073011(11), NM_073010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073011 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-14) (acl-14) mRNA, complete cds. 11/11 A 
NM_073010 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-14) (acl-14) mRNA, complete cds. 11/11 A 
GENEFINDER00000012099 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9330079:9331879:-1 10/11 None
K07B1.5a.1 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335646:-1 gene:K07B1.5 11/11 None
K07B1.5a.2 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335648:-1 gene:K07B1.5 11/11 None
K07B1.5b ENSEMBL cdna:known chromosome:CEL140:V:9330019:9335646:-1 gene:K07B1.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012081 4/11 Cross Hyb Matching Probes None
SNAP00000012082 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9329822-9332433(-) 99.37 99.37
Public Domain and Genome References
Ensembl K07B1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71374 Acyltransferase-like protein 14, isoform a [Caenorhabditis elegans] ref|NP_505412.2| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast AAL08040 Acyltransferase-like protein 14, isoform b [Caenorhabditis elegans] ref|NP_505411.1| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast CAE72153 Hypothetical protein CBG19251 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.4E-6
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505412.2 1 46-68
NP_505411.1 1 48-70
K07B1.5a.1 1 46-68
K07B1.5a.2 1 46-68
K07B1.5b 1 48-70
Sequence
Target Sequence 
>C. ELEGANS:174014_S_AT
actcgtccaccaatcaaatatgttcttgacgtgactatcgcctatccaaacggaattcca
ctttctcttgcaacattcggtttaggaactcgtgagaaatgtgacattgccgtgaattat
aaaatctacgatgcggctgaggttccattcgaagacgaagaaaaacttcgagattggatg
tatgaggtttacaaagagaaagacgaaatgctagctcgatactactcaacgggagaattc
aatccaggagagaaagggacacgaatagcattctcatgggccaagattatcggaatgtac
ggtttctggttcggatcattctatgctcaatacaatgtatattcatatcttattacatca
attgctaagttccttctattcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTCCACCAATCAAATATGTTC 645 99 47 Antisense
TGTTCTTGACGTGACTATCGCCTAT 568 561 67 Antisense
ATCGCCTATCCAAACGGAATTCCAC 363 37 83 Antisense
CACTTTCTCTTGCAACATTCGGTTT 38 197 105 Antisense
AAATCTACGATGCGGCTGAGGTTCC 658 117 168 Antisense
GGCTGAGGTTCCATTCGAAGACGAA 160 501 181 Antisense
TAGCTCGATACTACTCAACGGGAGA 640 651 258 Antisense
GAATAGCATTCTCATGGGCCAAGAT 25 327 309 Antisense
GAATGTACGGTTTCTGGTTCGGATC 141 333 339 Antisense
GGTTCGGATCATTCTATGCTCAATA 606 507 354 Antisense
AATTGCTAAGTTCCTTCTATTCCCG 445 177 406 Antisense
Sequence Source Affymetrix Proprietary Database