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[174013_at]

Description AU116026_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44A2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116026 /WB_GENE_ID=F44A2.6 /WP=CE04573 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:Q20383 protein_id:AAA83451.1; Caenorhabditis elegans cDNA clone:yk739g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 84      6grp_total > 57      4grp_total > 11      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 952
1 2 3 4 range
A 712.9
(-1.7)
P 		843.1
(0.8)
P 		643.5
(-3)
P 		954.9
(3)
P 		311
B 515.5
(-2.8)
P 		526.5
(-2.7)
P 		483.6
(-3)
P 		1435.9
(3)
P 		952
C 618.4
(-2)
P 		544.5
(-3)
P 		547.3
(-3)
P 		973.8
(3)
P 		429
avr 615.6
(-2.4) 		638
(-2.1) 		558.1
(-3) 		1121.5
(3) 		563

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 678.6
(1.2)
P 		695.8
(1.7)
P 		746.4
(3)
P 		520.8
(-3)
P 		674.6
(1.1)
P 		646.1
(0.3)
P 		226
B 630.1
(-1)
P 		579.4
(-1.6)
P 		521.6
(-2.4)
P 		477.1
(-3)
P 		596.3
(-1.4)
P 		925
(3)
P 		448
C 651.7
(0.6)
P 		693
(1.2)
P 		562.6
(-0.8)
P 		423.5
(-3)
P 		462.9
(-2.4)
P 		804.9
(3)
P 		381
avr 653.5
(0.4) 		656.1
(0.4) 		610.2
(-0.4) 		473.8
(-3) 		577.9
(-1) 		792
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 259.6
(3)
P 		183
(-0.8)
P 		168.2
(-1.6)
P 		139.8
(-3)
P 		120
B 164.4
(-1.4)
P 		130
(-2.4)
P 		112.1
(-3)
P 		306
(3)
P 		194
C 204.7
(3)
P 		156.6
(-3)
P 		190.8
(1.3)
P 		164.2
(-2.1)
P 		48
avr 209.6
(3) 		156.5
(-3) 		157
(-2.9) 		203.3
(2.3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 125.1
(-3)
P 		247.5
(3)
P 		162.6
(-1.2)
P 		132.1
(-2.7)
P 		203.6
(0.8)
P 		157.3
(-1.4)
P 		122
B 219.2
(-0.5)
P 		192.9
(-1.2)
P 		126.7
(-3)
P 		126.4
(-3)
P 		242.3
(0.2)
P 		344.9
(3)
P 		219
C 241.5
(2.1)
P 		211.5
(1.1)
P 		143.2
(-1.1)
P 		85.2
(-3)
P 		149.8
(-0.9)
P 		269.4
(3)
P 		184
avr 195.3
(0.4) 		217.3
(1.3) 		144.2
(-1.8) 		114.6
(-3) 		198.6
(0.5) 		257.2
(3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25176
Sequence Type Exemplar sequence
Representative Public ID AU116026 NCBI
Target Description AU116026_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F44A2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU116026 /WB_GENE_ID=F44A2.6 /WP=CE04573 /CHR=5 /FEA=Genomic Cluster /DEF=(ST.LOUIS) TR:Q20383 protein_id:AAA83451.1; Caenorhabditis elegans cDNA clone:yk739g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073011 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-14) (acl-14) mRNA, complete cds. 11/11 None
K07B1.5a.1 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335646:-1 gene:K07B1.5 11/11 None
K07B1.5a.2 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335648:-1 gene:K07B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179313 2 1 NM_073011 174013_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9329822-9332433(-) 99.37 99.37
Public Domain and Genome References
Ensembl K07B1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71374 Acyltransferase-like protein 14, isoform a [Caenorhabditis elegans] ref|NP_505412.2| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast AAL08040 Acyltransferase-like protein 14, isoform b [Caenorhabditis elegans] ref|NP_505411.1| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast CAE72153 Hypothetical protein CBG19251 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505412.2 1 46-68
K07B1.5a.1 1 46-68
K07B1.5a.2 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:174013_AT
atcataatttcctttacttgtcccttcctctctatcattataattcaaaactattttgat
ctctattgactgtttatttcgccccgttcaattttcaatcctgctttacaagttgatagt
tttcttttcattacggctaggttttttctatcccaccattttccttaatctattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATAATTTCCTTTACTTGTCCCT 569 25 436 Antisense
CCCTTCCTCTCTATCATTATAATTC 385 259 457 Antisense
TTCCTCTCTATCATTATAATTCAAA 122 701 460 Antisense
AAAACTATTTTGATCTCTATTGACT 171 131 482 Antisense
ACTATTTTGATCTCTATTGACTGTT 621 101 485 Antisense
TCTATTGACTGTTTATTTCGCCCCG 443 615 497 Antisense
CAATTTTCAATCCTGCTTTACAAGT 259 179 524 Antisense
CAATCCTGCTTTACAAGTTGATAGT 69 181 531 Antisense
TACAAGTTGATAGTTTTCTTTTCAT 408 641 542 Antisense
TCATTACGGCTAGGTTTTTTCTATC 12 617 563 Antisense
CCACCATTTTCCTTAATCTATTCTT 546 273 588 Antisense
Sequence Source Affymetrix Proprietary Database