[Home] | [Total List]

[174012_s_at]

Description AU111757 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F53B2.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111757 /WB_GENE_ID=F53B2.5 /WP=CE28029 /CHR=4 /FEA=Genomic Cluster /DEF=Armadillo-beta-catenin-like repeats (2 domains); Caenorhabditis elegans cDNA clone:yk734e3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 65      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 77      6grp_total > 55      4grp_total > 02      6grp_highest_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3013
1 2 3 4 range
A 1030.2
(-2.6)
P 		836.5
(-3)
P 		815.3
(-3)
P 		3828.1
(3)
P 		3013
B 974.3
(-2.9)
P 		919.4
(-3)
P 		945.8
(-2.9)
P 		3731
(3)
P 		2812
C 1140.8
(-2.6)
P 		966.6
(-3)
P 		997.1
(-2.9)
P 		3352.9
(3)
P 		2386
avr 1048.4
(-2.7) 		907.5
(-3) 		919.4
(-3) 		3637.3
(3) 		2730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 696
1 2 3 4 5 6 range
A 1282
(-0.2)
P 		1165.6
(-1.4)
P 		1597.4
(3)
P 		1071.8
(-2.3)
P 		1007.9
(-3)
P 		1378
(0.8)
P 		590
B 1613.4
(2.5)
P 		1120.8
(-3)
P 		1659.8
(3)
P 		1208.3
(-2)
P 		1130.8
(-2.9)
P 		1585.5
(2.2)
P 		539
C 1403.8
(0.1)
P 		1161.3
(-2.3)
P 		1169.7
(-2.2)
P 		1186.6
(-2)
P 		1088.9
(-3)
P 		1703.5
(3)
P 		615
avr 1433.1
(1.5) 		1149.2
(-2.1) 		1475.6
(2) 		1155.6
(-2) 		1075.9
(-3) 		1555.7
(3) 		480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 375.1
(0.1)
P 		181.6
(-3)
P 		213.1
(-2.5)
P 		560.4
(3)
P 		379
B 310.7
(-2)
P 		227.1
(-2.9)
P 		219.2
(-3)
P 		795.1
(3)
P 		576
C 377.6
(-0.9)
P 		277.9
(-3)
P 		347.5
(-1.5)
P 		565.3
(3)
P 		287
avr 354.5
(-1.2) 		228.9
(-3) 		259.9
(-2.5) 		640.3
(3) 		411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 236.3
(-3)
P 		414.6
(3)
P 		347.9
(0.8)
P 		271.8
(-1.8)
P 		304.1
(-0.7)
P 		335.5
(0.3)
P 		178
B 561.4
(2.3)
P 		373.1
(-1.8)
P 		403
(-1.2)
P 		320
(-3)
P 		459.4
(0.1)
P 		591.2
(3)
P 		271
C 520.3
(2.1)
P 		354.4
(-0.9)
P 		297.7
(-1.9)
P 		238.6
(-3)
P 		352.4
(-0.9)
P 		570.2
(3)
P 		332
avr 439.3
(1.4) 		380.7
(-0.2) 		349.5
(-1) 		276.8
(-3) 		372
(-0.4) 		499
(3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24815
Sequence Type Exemplar sequence
Representative Public ID AU111757 NCBI
Target Description AU111757 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F53B2.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU111757 /WB_GENE_ID=F53B2.5 /WP=CE28029 /CHR=4 /FEA=Genomic Cluster /DEF=Armadillo-beta-catenin-like repeats (2 domains); Caenorhabditis elegans cDNA clone:yk734e3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069998 NCBI Caenorhabditis elegans F53B2.8 (F53B2.8) mRNA, complete cds. 11/11 None
SNAP00000026521 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12526371:12527191:-1 11/11 None
GENEFINDER00000026527 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12525958:12527191:-1 11/11 None
F53B2.8 ENSEMBL cdna:known chromosome:CEL140:IV:12526232:12527280:-1 gene:F53B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12526322-12533944(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B2.8
Entrez Gene 178203 Entrez gene
SwissProt Q95QF1 EMBL-EBI
WormBase CE28030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42305 Hypothetical protein F53B2.8 [Caenorhabditis elegans] ref|NP_502399.1| F53B2.8 [Caenorhabditis elegans] 1.0E-56
blast CAC42305 Hypothetical protein F53B2.8 [Caenorhabditis elegans] ref|NP_502399.1| F53B2.8 [Caenorhabditis elegans] 5.0E-56
Sequence
Target Sequence 
>C. ELEGANS:174012_S_AT
gtggaggagccacaggtggagccggaggaggatttgggagatgctatgagtacgcaagaa
aaagatgacgtgaaagttgggaagaaaagagccccgaagaataacatgggtggaaagaaa
cgactgagatccaagctgggaaatgttgggaaacaccagaaaagggtacgctccaaggaa
aacactccggaaagaaagctggaaaaattggagaaactcgaacttcaactgaccttaaaa
cgaagtcgagaggagcagaaacgagccaaaaaagataagaaactggagagaaaagcactg
aagattcaaaaaaagttggaagctttgagaagcatcaaggaaaaaccacatcaaggctct
gaagcacaagggccaaaagtccccagagccagaaagatccgggtaccagccccaagacca
ccccgtcttccatatttggctctagtcgccaatcttcataaggctccgaaagcattgcgt
gatatgagagctgctgcttcacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGGAGCCACAGGTGGAGCCGG 67 489 1538 Antisense
GAAACGACTGAGATCCAAGCTGGGA 19 359 1654 Antisense
GGTACGCTCCAAGGAAAACACTCCG 350 505 1702 Antisense
GAAACTCGAACTTCAACTGACCTTA 585 355 1750 Antisense
AAACCACATCAAGGCTCTGAAGCAC 202 125 1880 Antisense
GCACAAGGGCCAAAAGTCCCCAGAG 693 315 1901 Antisense
GAGCCAGAAAGATCCGGGTACCAGC 458 383 1923 Antisense
CCGTCTTCCATATTTGGCTCTAGTC 359 265 1960 Antisense
GCTCTAGTCGCCAATCTTCATAAGG 574 299 1976 Antisense
AAGGCTCCGAAAGCATTGCGTGATA 338 161 1997 Antisense
GATATGAGAGCTGCTGCTTCACGCC 706 425 2018 Antisense
Sequence Source Affymetrix Proprietary Database