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[174010_at]

Description AW466230 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F19B6.1A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AW466230 /WB_GENE_ID=F19B6.1A /WP=CE05666 /CHR=4 /FEA=Genomic Cluster /DEF=uridine kinase; EST17 Rare cDNA library from Caenorhabditis elegans Caenorhabditis elegans cDNA, mRNA sequence.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 85      6grp_total > 59      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 600.9
(-1.8)
P 		540.5
(-3)
P 		849
(3)
P 		694.6
(-0)
P 		309
B 522.2
(-3)
P 		649.1
(-1.6)
P 		741.1
(-0.5)
P 		1049.8
(3)
P 		528
C 603.3
(-3)
P 		743.3
(-0.4)
P 		887.9
(2.2)
P 		928.7
(3)
P 		325
avr 575.5
(-3) 		644.3
(-1.7) 		826
(1.8) 		891
(3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 647
1 2 3 4 5 6 range
A 857.5
(2.9)
P 		649.4
(-2.2)
P 		797
(1.4)
P 		618.7
(-3)
P 		860.2
(3)
P 		842.9
(2.6)
P 		242
B 929.5
(0.8)
P 		871.8
(0.2)
P 		554.9
(-3)
P 		903.4
(0.5)
P 		799.6
(-0.5)
P 		1151.1
(3)
P 		596
C 840.6
(0.7)
P 		884.5
(1.2)
P 		504.1
(-3)
P 		634.9
(-1.6)
P 		776.4
(0)
P 		1045.8
(3)
P 		542
avr 875.9
(0.9) 		801.9
(-0.2) 		618.7
(-3) 		719
(-1.5) 		812.1
(-0.1) 		1013.3
(3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 218.8
(2.8)
P 		117.3
(-2.2)
P 		221.9
(3)
P 		101.7
(-3)
P 		120
B 166.5
(-2.4)
P 		160.3
(-3)
P 		171.7
(-1.9)
P 		223.7
(3)
P 		63
C 199.7
(-1.3)
P 		213.7
(-0.8)
P 		309.5
(3)
P 		156.6
(-3)
P 		153
avr 195
(-0.2) 		163.8
(-2.7) 		234.4
(3) 		160.7
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 158.1
(-2.9)
P 		231
(1.3)
P 		173.6
(-2)
P 		156.9
(-3)
P 		259.6
(3)
P 		205.2
(-0.2)
P 		103
B 323.4
(0.8)
P 		290.2
(0.2)
P 		134.7
(-3)
P 		239.3
(-0.9)
P 		324.9
(0.9)
P 		429.2
(3)
P 		295
C 311.6
(2)
P 		269.9
(0.8)
P 		128.3
(-3)
P 		127.7
(-3)
P 		251.2
(0.3)
P 		350.1
(3)
P 		222
avr 264.4
(0.9) 		263.7
(0.9) 		145.5
(-3) 		174.6
(-2) 		278.6
(1.4) 		328.2
(3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24506
Sequence Type Exemplar sequence
Representative Public ID AW466230 NCBI
Target Description AW466230 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F19B6.1A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AW466230 /WB_GENE_ID=F19B6.1A /WP=CE05666 /CHR=4 /FEA=Genomic Cluster /DEF=uridine kinase; EST17 Rare cDNA library from Caenorhabditis elegans Caenorhabditis elegans cDNA, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069950 NCBI Caenorhabditis elegans F19B6.1a (F19B6.1) mRNA, complete cds. 11/11 None
F19B6.1a ENSEMBL cdna:known chromosome:CEL140:IV:12329395:12334571:-1 gene:F19B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178181 2 1 NM_069950 174010_at (11), 175066_at (11), 187426_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12331333-12334062(-) 98.65 100.0
Public Domain and Genome References
Ensembl F19B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93462 Hypothetical protein F19B6.1b [Caenorhabditis elegans] ref|NP_502350.1| F19B6.1b [Caenorhabditis elegans] 0.0
blast CAA93459 Hypothetical protein F19B6.1a [Caenorhabditis elegans] ref|NP_502351.1| F19B6.1a [Caenorhabditis elegans] 0.0
blast CAE59842 Hypothetical protein CBG03314 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 5.4E-111
Sequence
Target Sequence 
>C. ELEGANS:174010_AT
ccattcgatatgtgatcatctgttatcacaaaaatgatcaattttcttcataatttatca
aagtttctgttttccttccatttcatctgatgaattcctactttcttgttccttttcact
aactttattattataattataattattcataatgttctttctttcccatcatcatatcca
tccttctatacattttgtttccatttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCGATATGTGATCATCTGTTA 576 267 1547 Antisense
AAATGATCAATTTTCTTCATAATTT 272 119 1578 Antisense
ATCAAAGTTTCTGTTTTCCTTCCAT 553 25 1603 Antisense
TTTTCCTTCCATTTCATCTGATGAA 552 677 1616 Antisense
TCATCTGATGAATTCCTACTTTCTT 638 621 1629 Antisense
ATGAATTCCTACTTTCTTGTTCCTT 103 45 1636 Antisense
TCTTGTTCCTTTTCACTAACTTTAT 256 617 1650 Antisense
TATTCATAATGTTCTTTCTTTCCCA 679 663 1690 Antisense
TCATAATGTTCTTTCTTTCCCATCA 133 621 1693 Antisense
ATCCTTCTATACATTTTGTTTCCAT 14 41 1726 Antisense
TCTATACATTTTGTTTCCATTTGTT 75 613 1731 Antisense
Sequence Source Affymetrix Proprietary Database