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[174009_s_at]

Description AV190453 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01G9.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV190453 /WB_GENE_ID=T01G9.6A /WP=CE18168 /CHR=1 /FEA=Genomic Cluster /GEN=kin-10 /DEF=Casein kinase II regulatory subunit; Caenorhabditis elegans cDNA clone:yk571c11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 10      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1349
1 2 3 4 range
A 918.5
(-2.4)
P 		898
(-2.5)
P 		810.6
(-3)
P 		1903.3
(3)
P 		1093
B 610.6
(-2.6)
P 		736
(-1.8)
P 		554.8
(-3)
P 		1468.3
(3)
P 		914
C 821.9
(-3)
P 		838.8
(-2.9)
P 		910.1
(-2.4)
P 		1737.1
(3)
P 		915
avr 783.7
(-2.8) 		824.3
(-2.6) 		758.5
(-3) 		1702.9
(3) 		944

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 876.9
(3)
P 		740.7
(-0.4)
P 		659.6
(-2.4)
P 		634.9
(-3)
P 		804.6
(1.2)
P 		815.5
(1.5)
P 		242
B 859.6
(3)
P 		625
(-0.8)
P 		486.3
(-3)
P 		730.8
(0.9)
P 		703.1
(0.5)
P 		823.3
(2.4)
P 		373
C 921.1
(3)
P 		680.4
(-2.9)
P 		677.7
(-3)
P 		706.2
(-2.3)
P 		860.4
(1.5)
P 		710.5
(-2.2)
P 		243
avr 885.9
(3) 		682
(-1.4) 		607.9
(-3) 		690.6
(-1.2) 		789.4
(0.9) 		783.1
(0.8) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 334.4
(3)
P 		194.9
(-3)
P 		211.9
(-2.3)
P 		278.6
(0.6)
P 		140
B 194.7
(-0.8)
P 		181.8
(-1.3)
P 		128.6
(-3)
P 		312.9
(3)
P 		184
C 272.1
(-0.6)
P 		241.2
(-3)
P 		317.2
(3)
P 		292.9
(1.1)
P 		76
avr 267.1
(1.1) 		206
(-3) 		219.2
(-2.1) 		294.8
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 161.6
(-2.1)
P 		263.4
(3)
P 		143.6
(-3)
P 		161
(-2.1)
P 		242.8
(2)
P 		198.6
(-0.2)
P 		120
B 299.1
(2.7)
P 		208
(-0.1)
P 		118.1
(-3)
P 		193.6
(-0.6)
P 		285.7
(2.3)
P 		307
(3)
P 		189
C 341.4
(3)
P 		207.6
(-1)
P 		172.5
(-2.1)
P 		142
(-3)
P 		278.4
(1.1)
P 		237.8
(-0.1)
P 		199
avr 267.4
(2.9) 		226.3
(0.9) 		144.7
(-3) 		165.5
(-2) 		269
(3) 		247.8
(2) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174009_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22602
Sequence Type Exemplar sequence
Representative Public ID AV190453 NCBI
Target Description AV190453 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01G9.6A /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV190453 /WB_GENE_ID=T01G9.6A /WP=CE18168 /CHR=1 /FEA=Genomic Cluster /GEN=kin-10 /DEF=Casein kinase II regulatory subunit; Caenorhabditis elegans cDNA clone:yk571c11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059854(11), NM_059853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059854 NCBI Caenorhabditis elegans protein KINase family member (kin-10) (kin-10) mRNA, complete cds. 11/11 None
NM_059853 NCBI Caenorhabditis elegans protein KINase family member (kin-10) (kin-10) mRNA, complete cds. 11/11 None
T01G9.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:8297084:8299129:-1 gene:T01G9.6 11/11 A 
T01G9.6b.1 ENSEMBL cdna:known chromosome:CEL140:I:8297084:8299129:-1 gene:T01G9.6 11/11 None
T01G9.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:8297084:8299201:-1 gene:T01G9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T01G9.6b.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8297039-8298870(-) 100.0 100.0
Public Domain and Genome References
Ensembl T01G9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00056 Hypothetical protein T01G9.6a [Caenorhabditis elegans] ref|NP_492255.1| protein KINase family member (kin-10) [Caenorhabditis elegans] pir||B87852 protein kin-10 [imported] - Caenorhabditis elegans 1.0E-126
blast P28548 Casein kinase II beta subunit (CK II beta) gb|AAA27983.1| casein kinase II beta subunit 1.0E-124
blast CAB00053 Hypothetical protein T01G9.6b [Caenorhabditis elegans] ref|NP_492254.1| protein KINase family member (kin-10) [Caenorhabditis elegans] 1.0E-124
blast CAB00053 Hypothetical protein T01G9.6b [Caenorhabditis elegans] ref|NP_492254.1| protein KINase family member (kin-10) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR000704 EMBL-EBI Casein kinase II, regulatory subunit 1.0E-126
Pfam IPR000704 EMBL-EBI Casein kinase II, regulatory subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174009_S_AT
attatggtctctgagccactttcttccttatttttgttttgatttcttctttccagtttc
cattcagaatgtcccccctctcaacacaacatccttattttcttcattgtttcgtttttt
cttctccccaaaattttcttttccgacaaaactcaagaatccggcggttcttccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGGTCTCTGAGCCACTTTCTT 366 13 705 Antisense
TTTGTTTTGATTTCTTCTTTCCAGT 537 667 737 Antisense
TGTTTTGATTTCTTCTTTCCAGTTT 644 561 739 Antisense
TCTTCTTTCCAGTTTCCATTCAGAA 120 617 749 Antisense
CAGTTTCCATTCAGAATGTCCCCCC 270 207 758 Antisense
CCTCTCAACACAACATCCTTATTTT 507 267 781 Antisense
TCAACACAACATCCTTATTTTCTTC 57 631 785 Antisense
CATCCTTATTTTCTTCATTGTTTCG 221 211 794 Antisense
TCCTTATTTTCTTCATTGTTTCGTT 22 593 796 Antisense
ACTCAAGAATCCGGCGGTTCTTCCA 26 99 855 Antisense
TCAAGAATCCGGCGGTTCTTCCATG 176 631 857 Antisense
Sequence Source Affymetrix Proprietary Database