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[174008_at] Kunitz/Bovine pancreatic trypsin inhibitor domain (8 domains)

Description CEK046BZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34F6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34450 /WB_GENE_ID=C34F6.1 /WP=CE15670 /CHR=X /FEA=Genomic Cluster /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain (8 domains); C.elegans cDNA clone yk46b12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 23      6grp_total > 02      4grp_total > 49      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 16.4
(-3)
A 		454
(3)
P 		435.1
(2.7)
P 		75.3
(-2.2)
A 		438
B 34.1
(-3)
A 		592.5
(3)
P 		395.7
(0.9)
P 		53
(-2.8)
A 		558
C 23.2
(-3)
A 		531.7
(3)
P 		469.5
(2.3)
P 		101.5
(-2.1)
A 		509
avr 24.6
(-3) 		526.1
(3) 		433.4
(1.9) 		76.6
(-2.4) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 361.4
(2.2)
P 		403.1
(3)
P 		216.2
(-0.6)
P 		294.8
(0.9)
P 		370.3
(2.4)
P 		91.7
(-3)
P 		311
B 319.4
(0.4)
P 		503.5
(3)
P 		213.5
(-1.1)
P 		390.4
(1.4)
P 		221.2
(-1)
P 		81.5
(-3)
P 		422
C 296.3
(0.6)
P 		422.4
(3)
P 		244.3
(-0.4)
P 		423.8
(3)
A 		247.1
(-0.3)
P 		103.6
(-3)
A 		320
avr 325.7
(1) 		443
(3) 		224.7
(-0.7) 		369.7
(1.7) 		279.5
(0.2) 		92.3
(-3) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 6
(-3)
A 		98.6
(2.2)
P 		113.8
(3)
P 		11
(-2.7)
A 		108
B 10.9
(-3)
A 		146.3
(3)
P 		91.7
(0.6)
P 		11.3
(-3)
A 		135
C 7.7
(-3)
A 		152.9
(2.6)
P 		163.6
(3)
P 		17.1
(-2.6)
A 		156
avr 8.2
(-3) 		132.6
(3) 		123
(2.5) 		13.1
(-2.8) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 66.6
(-0.8)
P 		143.4
(3)
P 		47.1
(-1.8)
P 		74.8
(-0.4)
P 		111.7
(1.4)
P 		22.3
(-3)
P 		121
B 111.1
(0.5)
P 		167.6
(3)
P 		51.8
(-2.1)
P 		103.4
(0.2)
P 		89.9
(-0.4)
P 		30.4
(-3)
P 		137
C 109.8
(1.8)
P 		128.9
(3)
P 		62.2
(-1.2)
P 		85.2
(0.2)
A 		79.9
(-0.1)
P 		34.7
(-3)
A 		94
avr 95.8
(0.4) 		146.6
(3) 		53.7
(-1.7) 		87.8
(-0) 		93.8
(0.3) 		29.1
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25820
Sequence Type Exemplar sequence
Representative Public ID CEK046BZR NCBI
Target Description CEK046BZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34F6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34450 /WB_GENE_ID=C34F6.1 /WP=CE15670 /CHR=X /FEA=Genomic Cluster /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain (8 domains); C.elegans cDNA clone yk46b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077467 NCBI Caenorhabditis elegans C34F6.1 (C34F6.1) mRNA, complete cds. 11/11 None
C34F6.1 ENSEMBL cdna:known chromosome:CEL140:X:11192435:11196764:-1 gene:C34F6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11192445-11196758(-) 100.0 100.0
Public Domain and Genome References
Gene Title Kunitz/Bovine pancreatic trypsin inhibitor domain (8 domains)
Ensembl C34F6.1
Entrez Gene 181306 Entrez gene
SwissProt O17644 EMBL-EBI
WormBase CE15670 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03944 Hypothetical protein C34F6.1 [Caenorhabditis elegans] ref|NP_509868.1| C34F6.1 [Caenorhabditis elegans] 0.0
blast CAE70687 Hypothetical protein CBG17404 [Caenorhabditis briggsae] 0.0
blast CAE61720 Hypothetical protein CBG05670 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.9E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.9E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.7E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-22
Sequence
Target Sequence 
>C. ELEGANS:174008_AT
aatcttcaattgtttttcactctttttaccggtaattgtcgctatttcattttaacaaac
aactaaattaactcccttgaaaatcaccaaaaagagttctttgattggatctccttgttt
ttttttgtaattgtctctctcattattaaatatgctttcatttttttgttttgttccatt
cttaccttctctgagtcgtaccaagctctgtttgctcagcgccatcaaaattgaccacta
ccatccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTCAATTGTTTTTCACTCTTT 142 171 3175 Antisense
TCACTCTTTTTACCGGTAATTGTCG 469 623 3191 Antisense
GTAATTGTCGCTATTTCATTTTAAC 170 463 3206 Antisense
AAGAGTTCTTTGATTGGATCTCCTT 258 153 3266 Antisense
GATTGGATCTCCTTGTTTTTTTTTG 459 435 3277 Antisense
TTTTTTTGTAATTGTCTCTCTCATT 531 675 3294 Antisense
CATTCTTACCTTCTCTGAGTCGTAC 100 217 3351 Antisense
ACCTTCTCTGAGTCGTACCAAGCTC 146 87 3358 Antisense
TCGTACCAAGCTCTGTTTGCTCAGC 49 603 3370 Antisense
TCTGTTTGCTCAGCGCCATCAAAAT 701 607 3381 Antisense
TCAAAATTGACCACTACCATCCATT 690 629 3399 Antisense
Sequence Source Affymetrix Proprietary Database