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[174006_at]

Description AV188558 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W01C8.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV188558 /WB_GENE_ID=W01C8.3 /WP=CE26018 /CHR=X /FEA=Genomic Cluster /DEF=C. elegans protein C26E6.9; E. coli malate synthase G; Caenorhabditis elegans cDNA clone:yk525h9 : 5prime end, single read.
Cluster 6grp_total > 26      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 50.3
(2.1)
P 		54.1
(3)
P 		40.8
(-0.2)
A 		29.4
(-3)
A 		25
B 13.7
(-0.5)
A 		23.6
(3)
A 		6.5
(-3)
A 		21.4
(2.2)
A 		17
C 25.1
(3)
M 		21.9
(2.2)
A 		14.3
(0.3)
A 		0.9
(-3)
A 		24
avr 29.7
(1.7) 		33.2
(3) 		20.5
(-1.8) 		17.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 56.5
(1.7)
P 		69
(3)
P 		39.7
(-0.1)
A 		16.5
(-2.5)
A 		12
(-3)
A 		39.1
(-0.1)
P 		57
B 51.8
(3)
P 		45.9
(2.1)
P 		26.9
(-0.7)
A 		22.8
(-1.4)
A 		11.9
(-3)
A 		24.2
(-1.2)
M 		40
C 42.9
(3)
A 		28.1
(-0.4)
P 		16.8
(-3)
A 		24
(-1.3)
A 		30.3
(0.1)
M 		27.8
(-0.5)
P 		26
avr 50.4
(3) 		47.7
(2.5) 		27.8
(-1.2) 		21.1
(-2.4) 		18.1
(-3) 		30.4
(-0.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.3
(3)
P 		11.7
(0.2)
P 		10.7
(-0.3)
A 		4.3
(-3)
A 		14
B 4.4
(1)
A 		5.8
(3)
A 		1.5
(-3)
A 		4.6
(1.3)
A 		4
C 8.3
(3)
M 		6.3
(1.5)
A 		5
(0.6)
A 		0.1
(-3)
A 		8
avr 10.3
(3) 		7.9
(1) 		5.7
(-0.8) 		3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.4
(-1)
P 		24.5
(3)
P 		8.7
(-1.5)
A 		4.2
(-2.8)
A 		3.6
(-3)
A 		9.5
(-1.3)
P 		21
B 18
(3)
P 		15.3
(1.8)
P 		6.5
(-2.2)
A 		6
(-2.5)
A 		4.8
(-3)
A 		9
(-1.1)
M 		13
C 15.9
(3)
A 		8.6
(-0.8)
P 		4.3
(-3)
A 		4.8
(-2.7)
A 		9.8
(-0.2)
M 		9.3
(-0.4)
P 		12
avr 14.8
(2.3) 		16.1
(3) 		6.5
(-2.2) 		5
(-3) 		6.1
(-2.4) 		9.3
(-0.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25888
Sequence Type Exemplar sequence
Representative Public ID AV188558 NCBI
Target Description AV188558 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W01C8.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV188558 /WB_GENE_ID=W01C8.3 /WP=CE26018 /CHR=X /FEA=Genomic Cluster /DEF=C. elegans protein C26E6.9; E. coli malate synthase G; Caenorhabditis elegans cDNA clone:yk525h9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076555
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01C8.3 ENSEMBL cdna:known chromosome:CEL140:X:5675204:5680183:-1 gene:W01C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5675218-5680157(-) 99.87 99.87
Public Domain and Genome References
Ensembl W01C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508956 W01C8.3 [Caenorhabditis elegans] gb|AAG00027.3| Hypothetical protein W01C8.3 [Caenorhabditis elegans] 0.0
blast T26044 hypothetical protein W01C8.3 - Caenorhabditis elegans 0.0
blast NP_494371 K12H6.11 [Caenorhabditis elegans] gb|AAF39940.1| Hypothetical protein K12H6.11 [Caenorhabditis elegans] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.9E-35
Sequence
Target Sequence 
>C. ELEGANS:174006_AT
tctacgactttaatctttcaaaacttctacactttcattaaaataacctcaggatattct
ctcgttataatattgggtttgggtatttttgaaagcttcattaaatttgacttagcttta
gttttccatagtccacaattcacaccaaaatttgtttctgaatagctatcagttatattc
aaacttgtacaaaaacatatatctcctgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGACTTTAATCTTTCAAAACT 464 613 2764 Antisense
TCAAAACTTCTACACTTTCATTAAA 47 629 2781 Antisense
ACACTTTCATTAAAATAACCTCAGG 360 111 2792 Antisense
AACCTCAGGATATTCTCTCGTTATA 353 147 2808 Antisense
ATTCTCTCGTTATAATATTGGGTTT 305 9 2819 Antisense
GAAAGCTTCATTAAATTTGACTTAG 291 359 2854 Antisense
ATTTGACTTAGCTTTAGTTTTCCAT 126 19 2868 Antisense
GCTTTAGTTTTCCATAGTCCACAAT 2 305 2878 Antisense
TTCCATAGTCCACAATTCACACCAA 354 697 2887 Antisense
TTCACACCAAAATTTGTTTCTGAAT 134 685 2902 Antisense
GTACAAAAACATATATCTCCTGACA 422 461 2950 Antisense
Sequence Source Affymetrix Proprietary Database