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[174005_at]

Description AV197332 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T16H12.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197332 /WB_GENE_ID=T16H12.5 /WP=CE00510 /CHR=3 /FEA=Genomic Cluster /DEF=Kruppel-like zinc finger protein (outside zinc fingers); Caenorhabditis elegans cDNA clone:yk665a2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1415
1 2 3 4 range
A 602.4
(-2.3)
P 		552.4
(-2.5)
P 		428
(-3)
P 		1842.7
(3)
P 		1415
B 531.6
(-2.7)
P 		499.4
(-2.8)
P 		463.7
(-3)
P 		1646.4
(3)
P 		1183
C 592.5
(-2.4)
P 		631.3
(-2.2)
P 		490.2
(-3)
P 		1496.1
(3)
P 		1006
avr 575.5
(-2.4) 		561
(-2.5) 		460.6
(-3) 		1661.7
(3) 		1201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 648
1 2 3 4 5 6 range
A 823
(3)
P 		511.7
(-0.5)
P 		290.2
(-3)
P 		374.2
(-2.1)
P 		653.9
(1.1)
P 		620.5
(0.7)
P 		533
B 821.8
(2.8)
P 		569.2
(-0.1)
P 		307.3
(-3)
P 		493
(-0.9)
P 		640.9
(0.8)
P 		840.4
(3)
P 		533
C 938
(3)
P 		444.3
(-2.1)
P 		358.6
(-3)
P 		401.7
(-2.6)
P 		576
(-0.7)
P 		849.4
(2.1)
P 		579
avr 860.9
(3) 		508.4
(-0.9) 		318.7
(-3) 		423
(-1.8) 		623.6
(0.4) 		770.1
(2) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 219.3
(1.1)
P 		119.9
(-2.7)
P 		111.9
(-3)
P 		269.7
(3)
P 		158
B 169.5
(-1.5)
P 		123.3
(-2.6)
P 		107.4
(-3)
P 		350.9
(3)
P 		244
C 196.1
(-1.1)
P 		181.5
(-2.2)
P 		170.9
(-3)
P 		252.3
(3)
P 		81
avr 195
(-0.6) 		141.6
(-2.6) 		130.1
(-3) 		291
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 151.7
(1)
P 		182
(2.3)
P 		63.2
(-3)
P 		94.9
(-1.6)
P 		197.3
(3)
P 		151.1
(0.9)
P 		134
B 286
(2.3)
P 		189.5
(-0.1)
P 		74.6
(-3)
P 		130.6
(-1.6)
P 		260.4
(1.7)
P 		313.4
(3)
P 		239
C 347.7
(3)
P 		135.6
(-1.8)
P 		91.3
(-2.8)
P 		80.8
(-3)
P 		186.4
(-0.6)
P 		284.4
(1.6)
P 		267
avr 261.8
(3) 		169
(-0) 		76.4
(-3) 		102.1
(-2.2) 		214.7
(1.5) 		249.6
(2.6) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23868
Sequence Type Exemplar sequence
Representative Public ID AV197332 NCBI
Target Description AV197332 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T16H12.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197332 /WB_GENE_ID=T16H12.5 /WP=CE00510 /CHR=3 /FEA=Genomic Cluster /DEF=Kruppel-like zinc finger protein (outside zinc fingers); Caenorhabditis elegans cDNA clone:yk665a2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027594 NCBI Caenorhabditis elegans T16H12.5b (T16H12.5) mRNA, complete cds. 11/11 None
T16H12.5b.1 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10093022:-1 gene:T16H12.5 11/11 None
T16H12.5b.2 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10097958:-1 gene:T16H12.5 11/11 None
T16H12.5b.3 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10093028:-1 gene:T16H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176422 2 1 NM_001027594 174005_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10090858-10092963(-) 100.0 100.0
Public Domain and Genome References
Ensembl T16H12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83138 Hypothetical protein T16H12.5a [Caenorhabditis elegans] ref|NP_001022764.1| T16H12.5a [Caenorhabditis elegans] sp|P34568|YNV5_CAEEL Hypothetical protein T16H12.5 in chromosome III 0.0
blast CAI58651 Hypothetical protein T16H12.5b [Caenorhabditis elegans] ref|NP_001022765.1| T16H12.5b [Caenorhabditis elegans] pir||S42384 Kruppel-like protein - Caenorhabditis elegans 0.0
blast CAE65045 Hypothetical protein CBG09886 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.9E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.5E-30
Sequence
Target Sequence 
>C. ELEGANS:174005_AT
aattgtccatattgatttgtcatcgaaatgtcttgaatctctatcccccccccatacttg
aattgtagtcatctatgattgatgccctcacaaggcatcatgtcacaatacgacgggttt
cttcctgtatgtttctgtatttttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTCCATATTGATTTGTCATCG 403 179 1229 Antisense
ATTGATTTGTCATCGAAATGTCTTG 258 5 1239 Antisense
CGAAATGTCTTGAATCTCTATCCCC 271 253 1252 Antisense
CCCCCCCATACTTGAATTGTAGTCA 527 261 1275 Antisense
GTAGTCATCTATGATTGATGCCCTC 92 457 1293 Antisense
ATCTATGATTGATGCCCTCACAAGG 499 31 1299 Antisense
TGCCCTCACAAGGCATCATGTCACA 528 583 1311 Antisense
GGCATCATGTCACAATACGACGGGT 35 537 1322 Antisense
ATACGACGGGTTTCTTCCTGTATGT 689 21 1336 Antisense
TTTCTTCCTGTATGTTTCTGTATTT 512 671 1346 Antisense
TCCTGTATGTTTCTGTATTTTTTTT 555 593 1351 Antisense
Sequence Source Affymetrix Proprietary Database