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[174002_s_at]

Description AV185779 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C45B11.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV185779 /WB_GENE_ID=C45B11.1B /WP=CE20564 /CHR=5 /FEA=Genomic Cluster /DEF=P21-Rho-binding domain ; Eukaryotic protein kinase domain; Caenorhabditis elegans cDNA clone:yk463e5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 97      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 470
1 2 3 4 range
A 1021.8
(3)
P 		672.1
(-2)
P 		608.4
(-2.9)
P 		602.9
(-3)
P 		419
B 976
(3)
P 		614.8
(-2.8)
P 		601.8
(-3)
P 		727.1
(-1)
P 		374
C 822.3
(3)
P 		627
(-1.3)
P 		714
(0.6)
P 		551.7
(-3)
P 		271
avr 940
(3) 		638
(-2.8) 		641.4
(-2.7) 		627.2
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1386
1 2 3 4 5 6 range
A 631.5
(-2.7)
P 		813.9
(-1)
P 		596.8
(-3)
P 		688.4
(-2.2)
P 		1259.8
(3)
P 		1114.1
(1.7)
P 		663
B 1080.2
(-1.5)
P 		1111.3
(-1.3)
P 		947.4
(-2.1)
P 		769.7
(-3)
P 		1128.5
(-1.2)
P 		1983.1
(3)
P 		1213
C 799.6
(-2.8)
P 		1142.4
(-0.7)
P 		759
(-3)
P 		985.3
(-1.6)
P 		992.8
(-1.6)
P 		1739.9
(3)
P 		981
avr 837.1
(-2.5) 		1022.5
(-1.2) 		767.7
(-3) 		814.5
(-2.7) 		1127
(-0.4) 		1612.4
(3) 		845
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 372
(3)
P 		145.9
(-1.8)
P 		159
(-1.5)
P 		88.3
(-3)
P 		284
B 311.2
(3)
P 		151.8
(-2.6)
P 		139.5
(-3)
P 		155
(-2.5)
P 		172
C 272.2
(3)
P 		180.3
(-0.1)
P 		248.9
(2.2)
P 		93
(-3)
P 		179
avr 318.5
(3) 		159.3
(-1.6) 		182.5
(-1) 		112.1
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 116.4
(-3)
P 		289.5
(0.9)
P 		130
(-2.7)
P 		174.6
(-1.7)
P 		380.2
(3)
P 		271.3
(0.5)
P 		264
B 375.9
(-1.1)
P 		369.9
(-1.1)
P 		230.1
(-2.7)
P 		203.9
(-3)
P 		458.5
(-0.1)
P 		739.5
(3)
P 		536
C 296.4
(-1.4)
P 		348.6
(-0.6)
P 		193.2
(-3)
P 		198.1
(-2.9)
P 		321.2
(-1)
P 		582.4
(3)
P 		389
avr 262.9
(-1.6) 		336
(-0.4) 		184.4
(-3) 		192.2
(-2.9) 		386.6
(0.5) 		531.1
(3) 		347
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174002_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25384
Sequence Type Exemplar sequence
Representative Public ID AV185779 NCBI
Target Description AV185779 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C45B11.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV185779 /WB_GENE_ID=C45B11.1B /WP=CE20564 /CHR=5 /FEA=Genomic Cluster /DEF=P21-Rho-binding domain ; Eukaryotic protein kinase domain; Caenorhabditis elegans cDNA clone:yk463e5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073409 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-66) (tag-66) mRNA, complete cds. 11/11 None
C45B11.1b ENSEMBL cdna:known chromosome:CEL140:V:11039054:11042909:-1 gene:C45B11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179527 2 1 NM_073409 174002_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11039129-11042910(-) 100.0 100.0
Public Domain and Genome References
Ensembl C45B11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98433 Hypothetical protein C45B11.1b [Caenorhabditis elegans] ref|NP_505810.1| Temporarily Assigned Gene name family member (tag-66) [Caenorhabditis elegans] 0.0
blast CAA98429 Hypothetical protein C45B11.1a [Caenorhabditis elegans] ref|NP_505809.1| Temporarily Assigned Gene name family member (tag-66) [Caenorhabditis elegans] 0.0
blast CAE75146 Hypothetical protein CBG23079 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-66
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.8E-86
Pfam IPR000095 EMBL-EBI PAK-box/P21-Rho-binding 8.7E-24
Sequence
Target Sequence 
>C. ELEGANS:174002_S_AT
gtaattcaatgatgttttttttctcatttacaccatctcaacatgcatcatttcacattc
agatcagtattacccctttccttgattgatttcaccttgctattattgtatgtatgtatt
gcttgtatgatgatgataactcattagagagacaccacactgccttttatgcaacatttt
tcatgtacttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTCAATGATGTTTTTTTTCTC 270 463 1625 Antisense
TTTTTTTTCTCATTTACACCATCTC 475 675 1639 Antisense
ACACCATCTCAACATGCATCATTTC 440 109 1654 Antisense
ATGCATCATTTCACATTCAGATCAG 423 43 1667 Antisense
TTCAGATCAGTATTACCCCTTTCCT 219 687 1682 Antisense
TACCCCTTTCCTTGATTGATTTCAC 532 649 1695 Antisense
GATTTCACCTTGCTATTATTGTATG 684 427 1712 Antisense
GTATGTATGTATTGCTTGTATGATG 170 455 1732 Antisense
CATTAGAGAGACACCACACTGCCTT 485 215 1766 Antisense
ACCACACTGCCTTTTATGCAACATT 524 85 1778 Antisense
TGCAACATTTTTCATGTACTTCACC 66 577 1794 Antisense
Sequence Source Affymetrix Proprietary Database