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[173998_s_at]

Description C47141 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F49E2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47141 /WB_GENE_ID=F49E2.1 /WP=CE16086 /CHR=X /FEA=Genomic Cluster /DEF=molybdenum cofactor biosynthesis protein (HINXTON) SW:Q20624 protein_id:CAA86430.1; C.elegans cDNA clone yk433a8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 83      6grp_total > 83      4grp_total > 20      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 330.2
(-0.3)
P 		280.4
(-2.8)
P 		276.7
(-3)
P 		393.8
(3)
P 		117
B 379
(0.3)
P 		331.5
(-0.7)
P 		211.4
(-3)
P 		519.6
(3)
P 		308
C 344.8
(-1.8)
P 		341.8
(-1.8)
P 		300
(-3)
P 		516.6
(3)
P 		217
avr 351.3
(-0.5) 		317.9
(-1.5) 		262.7
(-3) 		476.7
(3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 347.8
(-3)
P 		386
(-2.3)
P 		523.9
(0.1)
P 		540
(0.4)
P 		687
(3)
P 		462.8
(-1)
P 		339
B 352
(-3)
P 		459.7
(-1.1)
P 		434.5
(-1.5)
P 		472.5
(-0.8)
P 		684.8
(3)
P 		480.4
(-0.7)
P 		333
C 295.3
(-3)
P 		518.5
(2.6)
P 		329.2
(-2.1)
P 		507.3
(2.3)
P 		533.5
(3)
P 		457.6
(1.1)
P 		238
avr 331.7
(-3) 		454.7
(-0.6) 		429.2
(-1.1) 		506.6
(0.5) 		635.1
(3) 		466.9
(-0.3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 120.2
(3)
P 		60.9
(-2.7)
P 		72.3
(-1.6)
P 		57.6
(-3)
P 		63
B 120.9
(3)
P 		81.9
(-0.3)
P 		49
(-3)
P 		110.7
(2.1)
P 		72
C 114.1
(3)
P 		98.3
(-0.5)
P 		104.5
(0.9)
P 		87.1
(-3)
P 		27
avr 118.4
(3) 		80.4
(-2.3) 		75.3
(-3) 		85.1
(-1.6) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 64.1
(-3)
P 		137.3
(0.1)
P 		114.1
(-0.9)
P 		137
(0.1)
P 		207.3
(3)
P 		112.7
(-1)
P 		143
B 122.5
(-2.4)
P 		153
(-1.3)
P 		105.5
(-3)
P 		125.2
(-2.3)
P 		278.2
(3)
P 		179.2
(-0.4)
P 		173
C 109.4
(-1.3)
P 		158.2
(2)
P 		83.8
(-3)
P 		102
(-1.8)
P 		172.6
(3)
P 		153.2
(1.7)
P 		89
avr 98.7
(-3) 		149.5
(-0.5) 		101.1
(-2.9) 		121.4
(-1.9) 		219.4
(3) 		148.4
(-0.5) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173998_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25814
Sequence Type Exemplar sequence
Representative Public ID C47141 NCBI
Target Description C47141 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F49E2.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47141 /WB_GENE_ID=F49E2.1 /WP=CE16086 /CHR=X /FEA=Genomic Cluster /DEF=molybdenum cofactor biosynthesis protein (HINXTON) SW:Q20624 protein_id:CAA86430.1; C.elegans cDNA clone yk433a8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077211(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077211 NCBI Caenorhabditis elegans F49E2.1b (F49E2.1) mRNA, complete cds. 10/11 A 
GENEFINDER00000006385 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9561846:9565911:-1 11/11 None
F49E2.1b ENSEMBL cdna:known chromosome:CEL140:X:9561843:9565911:-1 gene:F49E2.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077210 1/11 Cross Hyb Matching Probes None
SNAP00000006378 6/11 Cross Hyb Matching Probes None
F49E2.1a 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181176 2 1 NM_077211 173998_s_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9561846-9565912(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49E2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42301 Hypothetical protein F49E2.1b [Caenorhabditis elegans] ref|NP_509612.2| F49E2.1b [Caenorhabditis elegans] sp|Q20624|YL71_CAEEL Hypothetical protein F49E2.1 in chromosome X 0.0
blast CAE69793 Hypothetical protein CBG16084 [Caenorhabditis briggsae] 0.0
blast CAC42302 Hypothetical protein F49E2.1a [Caenorhabditis elegans] ref|NP_509611.3| F49E2.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002820 EMBL-EBI Molybdopterin cofactor biosynthesis protein MoaC 1.8E-88
Pfam IPR010505 EMBL-EBI Molybdenum cofactor synthesis C 5.6E-49
Pfam IPR007197 EMBL-EBI Radical SAM 7.7E-40
Pfam IPR002820 EMBL-EBI Molybdopterin cofactor biosynthesis protein MoaC 1.8E-88
Sequence
Target Sequence 
>C. ELEGANS:173998_S_AT
tagacatgccgtaacatccgcatcttctatacttgttcacttaccatctagttcgcttta
tcatagtcacttgcattcttctcgtcacttttttatttctcaaattcgatgtttctcgac
aacctactcagtgtcttcaattactcatttgctcactcatgtggacaacaatggcaacgc
aaaacaagttgacgtctctcaaaaagataccagcacaagaacagctgtggcaagaggaac
aatcatgctgaccgctgagatatcccgccaaatatctgaaaataccatcaagaaaggaga
tgtcttaaccgttgccaagattgcaagcattttgggtgcaaaacaagttgcaaatctgat
tccattatgtcatccaatacgtcttgattttgtggacaccgtatttaatcatgatattga
aaactcaaaacttcattgcatttcaactgccaggtgcagtggaaatactggagttgagat
ggaagcattgactgcttgtacgattgccttactaactgtttatgatatgtgtaaagcaat
aagtcaaaaaatgatgctcaccaatatttaccttgtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACATGCCGTAACATCCGCATCT 87 653 1117 Antisense
TCATAGTCACTTGCATTCTTCTCGT 227 621 1177 Antisense
TTCTCGTCACTTTTTTATTTCTCAA 403 693 1195 Antisense
GTTTCTCGACAACCTACTCAGTGTC 158 451 1227 Antisense
GTGTCTTCAATTACTCATTTGCTCA 380 487 1247 Antisense
TCATTTGCTCACTCATGTGGACAAC 357 619 1261 Antisense
AGGAGATGTCTTAACCGTTGCCAAG 510 53 1411 Antisense
ATCTGATTCCATTATGTCATCCAAT 23 35 1470 Antisense
GTCATCCAATACGTCTTGATTTTGT 541 467 1485 Antisense
ACTTCATTGCATTTCAACTGCCAGG 475 103 1546 Antisense
GCTCACCAATATTTACCTTGTGCAC 526 301 1672 Antisense
Sequence Source Affymetrix Proprietary Database