[Home] | [Total List]

[173997_s_at] erythrocyte band 7 integral membrane protein like

Description AU115048_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F30A10.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115048 /WB_GENE_ID=F30A10.5 /WP=CE17726 /CHR=1 /FEA=Genomic Cluster /GEN=stl-1 /DEF=erythrocyte band 7 integral membrane protein like; Caenorhabditis elegans cDNA clone:yk725c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 75      6grp_total > 64      4grp_total > 61      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 1043.2
(3)
P 		933.1
(1.2)
P 		769.1
(-1.5)
P 		677
(-3)
P 		366
B 892.5
(1.8)
P 		847.2
(0.9)
P 		949.7
(3)
P 		653.9
(-3)
P 		296
C 887.6
(0.6)
P 		918.7
(1.1)
P 		1023
(3)
P 		685.8
(-3)
P 		337
avr 941.1
(3) 		899.7
(2.1) 		913.9
(2.4) 		672.2
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 717.9
(-3)
P 		832.4
(-1.7)
P 		1246.1
(3)
P 		1044.9
(0.7)
P 		741.5
(-2.7)
P 		872.3
(-1.2)
P 		528
B 853.1
(-3)
P 		853.7
(-3)
P 		1142
(3)
P 		963.3
(-0.7)
P 		942.9
(-1.1)
P 		1112.1
(2.4)
P 		289
C 781.1
(-2.1)
P 		870.7
(-0.6)
P 		956.7
(0.9)
P 		1019.4
(1.9)
P 		730.6
(-3)
P 		1081.1
(3)
P 		351
avr 784
(-3) 		852.3
(-1.8) 		1114.9
(3) 		1009.2
(1.1) 		805
(-2.6) 		1021.8
(1.3) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 379.8
(3)
P 		202.5
(-0.8)
P 		201.1
(-0.8)
P 		99.1
(-3)
P 		281
B 284.6
(3)
P 		209.2
(-0.1)
P 		220.1
(0.3)
P 		139.4
(-3)
P 		145
C 293.8
(1.4)
P 		264.1
(0.7)
P 		356.6
(3)
P 		115.6
(-3)
P 		241
avr 319.4
(3) 		225.3
(0.2) 		259.3
(1.2) 		118
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 132.3
(-3)
P 		296
(3)
P 		271.4
(2.1)
P 		265
(1.9)
P 		223.7
(0.4)
P 		212.4
(-0.1)
P 		164
B 296.8
(-1.4)
P 		284.2
(-1.9)
P 		277.3
(-2.2)
P 		255.1
(-3)
P 		383.1
(1.8)
P 		414.7
(3)
P 		160
C 289.5
(0.2)
P 		265.7
(-0.7)
P 		243.5
(-1.5)
P 		205
(-3)
P 		236.4
(-1.8)
P 		361.9
(3)
P 		157
avr 239.5
(-3) 		282
(-0.2) 		264.1
(-1.4) 		241.7
(-2.9) 		281.1
(-0.2) 		329.7
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173997_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22980
Sequence Type Exemplar sequence
Representative Public ID AU115048 NCBI
Target Description AU115048_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F30A10.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AU115048 /WB_GENE_ID=F30A10.5 /WP=CE17726 /CHR=1 /FEA=Genomic Cluster /GEN=stl-1 /DEF=erythrocyte band 7 integral membrane protein like; Caenorhabditis elegans cDNA clone:yk725c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060116 NCBI Caenorhabditis elegans STomatin-Like family member (stl-1) (stl-1) mRNA, complete cds. 11/11 None
SNAP00000021991 ENSEMBL cdna:SNAP chromosome:CEL140:I:9494939:9496149:-1 11/11 None
GENEFINDER00000022005 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9494939:9496149:-1 11/11 None
F30A10.5.2 ENSEMBL cdna:known chromosome:CEL140:I:9494783:9496154:-1 gene:F30A10.5 11/11 None
F30A10.5.1 ENSEMBL cdna:known chromosome:CEL140:I:9494783:9496152:-1 gene:F30A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9494771-9496081(-) 100.0 100.0
Public Domain and Genome References
Gene Title erythrocyte band 7 integral membrane protein like
Gene Symbol stl-1
Ensembl F30A10.5
Entrez Gene 172777 Entrez gene
SwissProt Q9XVP9 EMBL-EBI
WormBase CE32397 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13445_AT band 7 family protein at
ATH1-121501:253890_S_AT band 7 family protein at
CANINE:1586588_AT similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2) cfa
CANINE_2:CFA.11656.1.A1_S_AT similar to Stomatin-like protein 2 (SLP-2) (EPB72-like 2) cfa
DROSOPHILA_2:1626725_AT dm
DROSGENOME1:141550_AT dm
CHICKEN:GGA.12340.1.S1_AT similar to stomatin (EPB72)-like 2; stomatin-like protein 2; stomatin-like 2 gga
HG-U133_PLUS_2:215416_S_AT stomatin (EPB72)-like 2 hs
HG-U133A_2:215416_S_AT stomatin (EPB72)-like 2 hs
HG-FOCUS:215416_S_AT stomatin (EPB72)-like 2 hs
HG-U133A:215416_S_AT stomatin (EPB72)-like 2 hs
HU35KSUBA:RC_AA179298_AT stomatin (EPB72)-like 2 hs
HU35KSUBA:AA314466_AT stomatin (EPB72)-like 2 hs
U133_X3P:HS.3439.1.S1_3P_A_AT stomatin (EPB72)-like 2 hs
HG-U95AV2:34380_AT stomatin (EPB72)-like 2 hs
MU11KSUBA:AA221865_S_AT stomatin (Epb7.2)-like 2 mm
MG-U74AV2:96289_AT stomatin (Epb7.2)-like 2 mm
MG-U74BV2:109815_F_AT stomatin (Epb7.2)-like 2 mm
MOE430A:1448774_AT stomatin (Epb7.2)-like 2 mm
MOUSE430A_2:1448774_AT stomatin (Epb7.2)-like 2 mm
MOUSE430_2:1448774_AT stomatin (Epb7.2)-like 2 mm
RG-U34B:RC_AI012937_AT stomatin (Epb7.2)-like 2 (predicted) rn
RAE230A:1398908_AT stomatin (Epb7.2)-like 2 (predicted) rn
RAT230_2:1398908_AT stomatin (Epb7.2)-like 2 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03018 Hypothetical protein F30A10.5 [Caenorhabditis elegans] ref|NP_492517.2| STomatin-Like family member (stl-1) [Caenorhabditis elegans] 1.0E-177
blast CAB03018 Hypothetical protein F30A10.5 [Caenorhabditis elegans] ref|NP_492517.2| STomatin-Like family member (stl-1) [Caenorhabditis elegans] 1.0E-174
blast CAB03018 Hypothetical protein F30A10.5 [Caenorhabditis elegans] ref|NP_492517.2| STomatin-Like family member (stl-1) [Caenorhabditis elegans] 1.0E-169
blast CAE56713 Hypothetical protein CBG24499 [Caenorhabditis briggsae] 1.0E-154
blast CAE56713 Hypothetical protein CBG24499 [Caenorhabditis briggsae] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 5.8E-78
Pfam IPR001107 EMBL-EBI Band 7 protein 3.7E-68
Pfam IPR001107 EMBL-EBI Band 7 protein 3.1E-77
Sequence
Target Sequence 
>C. ELEGANS:173997_S_AT
aaagcatcagcaccttggggaattcaatgtatgcgatacgaaatcagagatatgcagatg
ccatcaaaaattcaagaagctatgcaaatgcaagttgaagctgagagaaagaaaagagcc
gcgattttggaatcagaaggaatcagagaagctgccattaatagggccgaaggagacaag
aaatcagctattttggcgtctgaggctgttcaagccgaacgtatcaatgtagcaaaggga
gaagcagaagcagtaatccttaaagccgaatctcgtgccaaagctattgaacgtattgca
ttggctcttgagaaagatggaggtgcaaatgctgctggattgaccgttgcagagcaatat
gttggagcttttggaaatcttgccaaggaatcaaatactgttgttcttccggcaaatctc
agtgatccaggaagtatggtttctcaagcacttgctgtttacgactcattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCATCAGCACCTTGGGGAATTC 104 123 530 Antisense
GAAGCTGCCATTAATAGGGCCGAAG 655 341 677 Antisense
TTTGGCGTCTGAGGCTGTTCAAGCC 444 665 721 Antisense
TCAAGCCGAACGTATCAATGTAGCA 455 631 739 Antisense
AAGCCGAATCTCGTGCCAAAGCTAT 379 149 792 Antisense
GAACGTATTGCATTGGCTCTTGAGA 389 347 818 Antisense
GGTGCAAATGCTGCTGGATTGACCG 226 501 851 Antisense
AATCAAATACTGTTGTTCTTCCGGC 439 169 918 Antisense
GTTCTTCCGGCAAATCTCAGTGATC 457 443 932 Antisense
AGTATGGTTTCTCAAGCACTTGCTG 440 61 962 Antisense
GCACTTGCTGTTTACGACTCATTGA 59 317 977 Antisense
Sequence Source Affymetrix Proprietary Database