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[173996_at]

Description AV198462 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17C3.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV198462 /WB_GENE_ID=C17C3.12 /WP=CE03983 /CHR=2 /FEA=Genomic Cluster /DEF=acyl-CoA dehydrogenase (ST.LOUIS) TR:Q18057 protein_id:AAB52696.1; Caenorhabditis elegans cDNA clone:yk679d2 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 76      6grp_total > 66      4grp_total > 24      6grp_cgc > 47      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 25.4
(-3)
A 		68.1
(0.8)
P 		82.4
(2.1)
P 		92.8
(3)
P 		67
B 4.9
(-3)
A 		89.7
(3)
P 		61.9
(1)
P 		71.2
(1.7)
P 		85
C 24.4
(-2)
A 		8.9
(-3)
A 		49.7
(-0.4)
P 		103.1
(3)
P 		94
avr 18.2
(-3) 		55.6
(0.2) 		64.7
(0.9) 		89
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 43
(-2.5)
P 		111.7
(0.6)
P 		126.8
(1.2)
P 		31.7
(-3)
M 		122.5
(1)
P 		166.5
(3)
P 		135
B 46.5
(-2.7)
P 		110.8
(0.3)
P 		104.2
(-0)
P 		74.8
(-1.4)
P 		38.9
(-3)
P 		170.5
(3)
P 		132
C 66.3
(-2.3)
P 		59.2
(-2.5)
P 		55.6
(-2.6)
P 		66.4
(-2.3)
P 		44.6
(-3)
P 		220.4
(3)
P 		176
avr 51.9
(-3) 		93.9
(-1.1) 		95.5
(-1) 		57.6
(-2.7) 		68.7
(-2.2) 		185.8
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 9.2
(-3)
A 		14.8
(-0.3)
P 		21.5
(3)
P 		13.6
(-0.9)
P 		12
B 1.6
(-3)
A 		22.1
(3)
P 		14.4
(0.7)
P 		15.2
(1)
P 		21
C 8.1
(-0.8)
A 		2.6
(-3)
A 		17.3
(3)
P 		17.4
(3)
P 		15
avr 6.3
(-3) 		13.2
(0.6) 		17.7
(3) 		15.4
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 7.9
(-3)
P 		39.7
(2.9)
P 		27.6
(0.6)
P 		8
(-3)
M 		37
(2.4)
P 		40.5
(3)
P 		33
B 16.2
(-2.9)
P 		36.9
(-0.4)
P 		25.3
(-1.8)
P 		19.8
(-2.5)
P 		15.8
(-3)
P 		63.6
(3)
P 		48
C 24.6
(-1.9)
P 		18.1
(-2.5)
P 		14.2
(-2.9)
P 		13.4
(-3)
P 		14.4
(-2.9)
P 		73.8
(3)
P 		60
avr 16.2
(-2.7) 		31.6
(-0.6) 		22.4
(-1.9) 		13.7
(-3) 		22.4
(-1.9) 		59.3
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23783
Sequence Type Exemplar sequence
Representative Public ID AV198462 NCBI
Target Description AV198462 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17C3.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV198462 /WB_GENE_ID=C17C3.12 /WP=CE03983 /CHR=2 /FEA=Genomic Cluster /DEF=acyl-CoA dehydrogenase (ST.LOUIS) TR:Q18057 protein_id:AAB52696.1; Caenorhabditis elegans cDNA clone:yk679d2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062665(11), NM_062666(11), NM_001026791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062665 NCBI Caenorhabditis elegans C17C3.12a (C17C3.12) mRNA, complete cds. 11/11 None
NM_062666 NCBI Caenorhabditis elegans C17C3.12b (C17C3.12) mRNA, complete cds. 11/11 None
NM_001026791 NCBI Caenorhabditis elegans INSulin related family member (ins-13) (ins-13) mRNA, complete cds. 11/11 None
C17C3.18 ENSEMBL cdna:known chromosome:CEL140:II:5544555:5545506:-1 gene:C17C3.18 11/11 None
C17C3.12a ENSEMBL cdna:known chromosome:CEL140:II:5544742:5547460:-1 gene:C17C3.12 11/11 A 
C17C3.12b ENSEMBL cdna:known chromosome:CEL140:II:5544764:5547460:-1 gene:C17C3.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173940 3 2 NM_062665 173996_at (11)
NM_062666 173996_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5544790-5547458(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ins-13
Ensembl C17C3.18
C17C3.12
Entrez Gene 3565351 Entrez gene
SwissProt Q7JP48 EMBL-EBI
WormBase CE35405 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7582 physiological process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL02436 Hypothetical protein C17C3.12b [Caenorhabditis elegans] ref|NP_495067.1| C17C3.12b [Caenorhabditis elegans] 1.0E-164
blast AAK31426 Hypothetical protein C17C3.12a [Caenorhabditis elegans] ref|NP_495066.2| C17C3.12a [Caenorhabditis elegans] 1.0E-152
blast CAE59136 Hypothetical protein CBG02437 [Caenorhabditis briggsae] 3.0E-88
blast AAL02437 Hypothetical protein C17C3.12c [Caenorhabditis elegans] ref|NP_495068.1| C17C3.12c [Caenorhabditis elegans] 1.0E-86
blast CAE67197 Hypothetical protein CBG12633 [Caenorhabditis briggsae] 8.0E-84
Protein Families
Method ID Description E-Value
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 9.0E-99
ec ACDL_HUMAN (P28330) Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) (LCAD) 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 3.7E-19
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 6.4E-30
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.8E-26
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.9E-4
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 8.6E-37
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 8.5E-7
Sequence
Target Sequence 
>C. ELEGANS:173996_AT
gggatactttatcgctcataattttttttatttatatccttacatcaaagtgcactcaac
aattttccactcatccacttaaaacaatgaccagctgctgagaaaaaaattctcgacgtt
cttcaatctatatttcaaattcttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATACTTTATCGCTCATAATTTT 380 495 1194 Antisense
TTTTTTTATTTATATCCTTACATCA 374 673 1216 Antisense
TTTATATCCTTACATCAAAGTGCAC 254 659 1224 Antisense
GTGCACTCAACAATTTTCCACTCAT 434 481 1243 Antisense
CAATTTTCCACTCATCCACTTAAAA 540 175 1253 Antisense
TTTCCACTCATCCACTTAAAACAAT 451 669 1257 Antisense
TTAAAACAATGACCAGCTGCTGAGA 587 679 1272 Antisense
AAAAATTCTCGACGTTCTTCAATCT 176 129 1298 Antisense
TTCTCGACGTTCTTCAATCTATATT 373 691 1303 Antisense
GACGTTCTTCAATCTATATTTCAAA 634 377 1308 Antisense
TCAATCTATATTTCAAATTCTTTTC 689 633 1316 Antisense
Sequence Source Affymetrix Proprietary Database