[Home] | [Total List]

[173994_at]

Description AV197796 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0348.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197796 /WB_GENE_ID=B0348.6 /WP=CE17331 /CHR=5 /FEA=Genomic Cluster /DEF=translation initiation factor (ST.LOUIS) SW:O61955 protein_id:AAC17807.1; Caenorhabditis elegans cDNA clone:yk670g5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 03      4grp_high_8_8 > 37      6grp_highest_nonorm > 95      6grp_total > 89      4grp_total > 42      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 788.5
(1.6)
P 		645.9
(-3)
P 		830.1
(3)
P 		712.3
(-0.8)
P 		184
B 551.5
(-3)
P 		992.9
(3)
P 		904.3
(1.8)
P 		738.2
(-0.5)
P 		441
C 530.6
(-3)
P 		1030.8
(3)
P 		595
(-2.2)
P 		614
(-2)
P 		500
avr 623.5
(-3) 		889.9
(3) 		776.5
(0.4) 		688.2
(-1.5) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 925
1 2 3 4 5 6 range
A 651.6
(-1.3)
P 		483.6
(-2.4)
P 		389.6
(-3)
P 		521.3
(-2.1)
P 		1212.6
(2.3)
P 		1314.6
(3)
P 		925
B 755.4
(0.2)
P 		494.2
(-2.7)
P 		468.8
(-3)
P 		484.1
(-2.8)
P 		876.1
(1.6)
P 		1001.3
(3)
P 		533
C 682.1
(-0.7)
P 		631.6
(-1.2)
P 		602.5
(-1.5)
P 		465.8
(-3)
P 		1020.4
(3)
P 		1022.1
(3)
P 		556
avr 696.4
(-1) 		536.5
(-2.5) 		487
(-3) 		490.4
(-3) 		1036.4
(2.3) 		1112.7
(3) 		626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 287.1
(3)
P 		140.2
(-1.8)
P 		217
(0.7)
P 		104.3
(-3)
P 		183
B 175.9
(-1.7)
P 		245.2
(3)
P 		209.5
(0.6)
P 		157.3
(-3)
P 		88
C 175.6
(-0.8)
P 		296.3
(3)
P 		207.4
(0.2)
P 		103.5
(-3)
P 		193
avr 212.9
(2.2) 		227.2
(3) 		211.3
(2.1) 		121.7
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 120.1
(-2.2)
P 		172
(-1.1)
P 		84.8
(-3)
P 		132.2
(-2)
P 		365.9
(3)
P 		320.1
(2)
P 		281
B 262.9
(0.4)
P 		164.5
(-1.8)
P 		113.8
(-3)
P 		128.2
(-2.7)
P 		355.9
(2.6)
P 		373.4
(3)
P 		260
C 252.8
(0.8)
P 		192.7
(-0.6)
P 		153.3
(-1.6)
P 		93.7
(-3)
P 		330.2
(2.7)
P 		342.1
(3)
P 		248
avr 211.9
(-0.6) 		176.4
(-1.5) 		117.3
(-3) 		118
(-3) 		350.7
(3) 		345.2
(2.9) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25691
Sequence Type Exemplar sequence
Representative Public ID AV197796 NCBI
Target Description AV197796 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0348.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197796 /WB_GENE_ID=B0348.6 /WP=CE17331 /CHR=5 /FEA=Genomic Cluster /DEF=translation initiation factor (ST.LOUIS) SW:O61955 protein_id:AAC17807.1; Caenorhabditis elegans cDNA clone:yk670g5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171920, NM_070722, NM_070723
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0348.6a.1 ENSEMBL cdna:known chromosome:CEL140:V:6423:7650:-1 gene:B0348.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070723 5/11 Cross Hyb Matching Probes None
B0348.6a.2 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6433-7647(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0348.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17807 Initiation factor 4e (eif4e) family protein 3, isoform a [Caenorhabditis elegans] ref|NP_503124.1| Initiation Factor 4E (eIF4E) family member (ife-3) [Caenorhabditis elegans] sp|O61955|IF4E3_CAEEL Eukaryotic translation initiation factor 4E-3 (eIF4E-3) (eIF-4E-3) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) 1.0E-145
blast AAM22022 Initiation factor 4e (eif4e) family protein 3, isoform c [Caenorhabditis elegans] ref|NP_741502.1| Initiation Factor 4E (eIF4E) family member (ife-3) [Caenorhabditis elegans] 1.0E-143
blast AAK68676 Initiation factor 4e (eif4e) family protein 3, isoform b [Caenorhabditis elegans] ref|NP_503123.1| Initiation Factor 4E (eIF4E) family member (ife-3) [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001040 EMBL-EBI Eukaryotic translation initiation factor 4E (eIF-4E) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173994_AT
accccaactccttaagcatattctaaagatctcaccaattcctctcaccgtaaatgagct
tccccgtactcccagtctcaatgttgtcttgaaaaatgaactgtttttcggacacgatca
tcgctttaactattcgaaaatcagctcatttttcaagtcgtaccccccacctaatgtatt
ggtgcttcccctccaatttgtacctactgtttcgcttccccctattgatttaccggtttt
cgtattgctctcttgttgttactagattcgagactgatcgacgcctgtagccgaattcgt
ttgttcttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCCAACTCCTTAAGCATATTCTA 40 89 746 Antisense
CTAAAGATCTCACCAATTCCTCTCA 606 225 768 Antisense
CTCACCGTAAATGAGCTTCCCCGTA 85 1 789 Antisense
TACTCCCAGTCTCAATGTTGTCTTG 126 647 812 Antisense
GTTTTTCGGACACGATCATCGCTTT 228 449 848 Antisense
TCAGCTCATTTTTCAAGTCGTACCC 381 623 886 Antisense
GTACCCCCCACCTAATGTATTGGTG 698 87 905 Antisense
CAATTTGTACCTACTGTTTCGCTTC 257 181 939 Antisense
GATTTACCGGTTTTCGTATTGCTCT 563 427 972 Antisense
GTATTGCTCTCTTGTTGTTACTAGA 225 453 987 Antisense
GTAGCCGAATTCGTTTGTTCTTCAG 386 457 1032 Antisense
Sequence Source Affymetrix Proprietary Database