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[173993_s_at] Zinc finger, C2H2 type (2 domains)

Description CE4592 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F47H4.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T02459 /WB_GENE_ID=F47H4.1 /WP=CE16062 /CHR=5 /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type (2 domains); wEST03180 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAE21, mRNA sequence.
Cluster 6grp_total > 78      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 67.6
(-0.4)
A 		45.3
(-3)
A 		96.6
(3)
A 		94.7
(2.8)
A 		51
B 28.7
(-3)
A 		30.7
(-2.8)
A 		68.9
(1.6)
A 		81.3
(3)
A 		53
C 17
(-3)
A 		73
(1.6)
A 		69.4
(1.3)
A 		89.5
(3)
A 		73
avr 37.8
(-3) 		49.7
(-1.6) 		78.3
(1.8) 		88.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 91.2
(-1.6)
A 		42.7
(-2.7)
A 		36.2
(-2.9)
A 		31.8
(-3)
A 		108.7
(-1.2)
A 		283.5
(3)
A 		252
B 60.8
(-2.4)
A 		77.7
(-2)
A 		57.4
(-2.5)
A 		32.2
(-3)
A 		124.8
(-1.1)
A 		317.8
(3)
P 		286
C 50.7
(-2.1)
A 		64.7
(-1.8)
A 		66.1
(-1.8)
A 		3.8
(-3)
A 		126.8
(-0.6)
A 		306.4
(3)
P 		303
avr 67.6
(-2) 		61.7
(-2.2) 		53.2
(-2.3) 		22.6
(-3) 		120.1
(-0.9) 		302.6
(3) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.6
(2.7)
A 		9.8
(-3)
A 		25.3
(3)
A 		13.9
(-1.4)
A 		16
B 9.1
(-2.1)
A 		7.6
(-3)
A 		16
(2.2)
A 		17.3
(3)
A 		10
C 5.6
(-3)
A 		21
(2)
A 		24.2
(3)
A 		15.1
(0.1)
A 		19
avr 13.1
(-2.8) 		12.8
(-3) 		21.8
(3) 		15.4
(-1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 16.8
(-2.1)
A 		15.2
(-2.3)
A 		7.9
(-3)
A 		8.1
(-3)
A 		32.8
(-0.6)
A 		69
(3)
A 		61
B 21.2
(-2.3)
A 		25.9
(-2.1)
A 		13.9
(-2.7)
A 		8.5
(-3)
A 		50.7
(-0.7)
A 		118.5
(3)
P 		110
C 18.8
(-1.9)
A 		19.7
(-1.9)
A 		16.8
(-2.1)
A 		0.8
(-3)
A 		41
(-0.6)
A 		102.6
(3)
P 		102
avr 18.9
(-2.1) 		20.3
(-2) 		12.9
(-2.5) 		5.8
(-3) 		41.5
(-0.6) 		96.7
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173993_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25498
Sequence Type Exemplar sequence
Representative Public ID CE4592 NCBI
Target Description CE4592 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F47H4.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T02459 /WB_GENE_ID=F47H4.1 /WP=CE16062 /CHR=5 /FEA=Genomic Cluster /DEF=Zinc finger, C2H2 type (2 domains); wEST03180 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAE21, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074993 NCBI Caenorhabditis elegans F47H4.1 (F47H4.1) mRNA, complete cds. 11/11 None
SNAP00000022029 ENSEMBL cdna:SNAP chromosome:CEL140:V:17351407:17352638:-1 11/11 None
GENEFINDER00000022040 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17351407:17352638:-1 11/11 None
F47H4.1 ENSEMBL cdna:known chromosome:CEL140:V:17351244:17352719:-1 gene:F47H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17351407-17352639(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl F47H4.1
Entrez Gene 180149 Entrez gene
SwissProt O45526 EMBL-EBI
WormBase CE16062 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 1.0E-132
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 1.0E-106
blast AAC19207 Hypothetical protein F36F12.8 [Caenorhabditis elegans] ref|NP_503566.1| F36F12.8 [Caenorhabditis elegans] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:173993_S_AT
ccgtcatcgtcagctgatgcacagcaacgagcacacttgtatgatgtgcgagcgggctct
taaccaaaaagagactatccgtgagcacatgagaaatgagcacaacctggctcaagtgtt
cacttgtggctgttgcaattggactttcgccagcaagagacaactcacggagcacacaaa
gtgcattcagggaactggagctccaggagacaccattccaatcgccaagtccattaatgc
accaggatcacttattcagtcgacaatccaaggaactccaccagtggtgaaaaccggtcg
caaacgtcccatgggaggttcgttgtcgccgtcatcttccgtctccacatccatctcttc
ccgtgatgcctccggatcgcctccaccaactgaagaagaagccgagcgcaaggtgctctt
tgacaacgcagtcgacactattctacagagcaagttcttcacttatcagcagatcactga
agtcgacacttgggtcaaaatcatcgaaagtgctaatactcttgctgacacactccaacg
catcaagaaatcacagaaggtcaaagcagaagggccagccgtcgagagcaagatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCATCGTCAGCTGATGCACAGC 193 265 136 Antisense
GCACAGCAACGAGCACACTTGTATG 348 317 154 Antisense
GATGTGCGAGCGGGCTCTTAACCAA 187 409 178 Antisense
CACAACCTGGCTCAAGTGTTCACTT 633 193 236 Antisense
GTGGCTGTTGCAATTGGACTTTCGC 472 491 261 Antisense
CCAATCGCCAAGTCCATTAATGCAC 656 273 353 Antisense
GGTGCTCTTTGACAACGCAGTCGAC 537 499 547 Antisense
TGCTAATACTCTTGCTGACACACTC 565 579 646 Antisense
GACACACTCCAACGCATCAAGAAAT 262 367 662 Antisense
GGTCAAAGCAGAAGGGCCAGCCGTC 621 503 694 Antisense
GGCCAGCCGTCGAGAGCAAGATGAT 82 541 708 Antisense
Sequence Source Affymetrix Proprietary Database