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[173988_at]

Description CE3881_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F27E11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01388 /WB_GENE_ID=F27E11.3 /WP=CE09734 /CHR=5 /FEA=Genomic Cluster /DEF=transmembrane receptor (ST.LOUIS) TR:O16190 protein_id:AAB65257.1; wEST02109 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESQ25, mRNA sequence.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 27      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 656
1 2 3 4 range
A 998.2
(3)
P 		504
(-1.8)
P 		376.5
(-3)
P 		716.1
(0.3)
P 		622
B 976.3
(3)
P 		543.4
(-1.1)
P 		342
(-3)
P 		758
(0.9)
P 		634
C 865
(3)
P 		551.9
(-0.6)
P 		347.7
(-3)
P 		718.7
(1.3)
P 		517
avr 946.5
(3) 		533.1
(-1.2) 		355.4
(-3) 		730.9
(0.8) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 790
1 2 3 4 5 6 range
A 1121.6
(3)
P 		783.2
(0.1)
P 		410.5
(-3)
P 		435.7
(-2.8)
P 		595.8
(-1.4)
P 		587.4
(-1.5)
P 		711
B 1112.5
(3)
P 		797.5
(0.6)
P 		332.1
(-3)
P 		391.5
(-2.5)
P 		357.8
(-2.8)
P 		643.9
(-0.6)
P 		780
C 931.9
(3)
P 		691
(0.4)
P 		519.8
(-1.4)
P 		367.5
(-3)
P 		407.3
(-2.6)
P 		509.5
(-1.5)
P 		564
avr 1055.3
(3) 		757.2
(0.3) 		420.8
(-2.8) 		398.2
(-3) 		453.6
(-2.5) 		580.3
(-1.3) 		657
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 363.4
(3)
P 		109.4
(-2.8)
P 		98.4
(-3)
P 		104.8
(-2.9)
P 		265
B 311.3
(3)
P 		134.2
(-1.6)
P 		79.2
(-3)
P 		161.5
(-0.9)
P 		232
C 286.3
(3)
P 		158.7
(-1.6)
P 		121.2
(-3)
P 		121.2
(-3)
P 		165
avr 320.3
(3) 		134.1
(-2.1) 		99.6
(-3) 		129.2
(-2.2) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 206.8
(0.7)
P 		278.6
(3)
P 		89.4
(-3)
P 		110.5
(-2.3)
P 		179.8
(-0.1)
P 		143
(-1.3)
P 		189
B 387.1
(3)
P 		265.4
(0.6)
P 		80.6
(-3)
P 		103.7
(-2.5)
P 		145.4
(-1.7)
P 		240.1
(0.1)
P 		307
C 345.4
(3)
P 		210.8
(0)
P 		132.3
(-1.7)
P 		73.9
(-3)
P 		131.8
(-1.7)
P 		170.6
(-0.9)
P 		272
avr 313.1
(3) 		251.6
(1.3) 		100.8
(-2.9) 		96
(-3) 		152.3
(-1.4) 		184.6
(-0.6) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25697
Sequence Type Exemplar sequence
Representative Public ID CE3881 NCBI
Target Description CE3881_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F27E11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01388 /WB_GENE_ID=F27E11.3 /WP=CE09734 /CHR=5 /FEA=Genomic Cluster /DEF=transmembrane receptor (ST.LOUIS) TR:O16190 protein_id:AAB65257.1; wEST02109 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESQ25, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071564 NCBI Caenorhabditis elegans Caenorhabditis FriZzled homolog family member (cfz-2) (cfz-2) mRNA, complete cds. 11/11 None
F27E11.3a ENSEMBL cdna:known chromosome:CEL140:V:3441332:3444703:-1 gene:F27E11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178768 2 1 NM_071564 173988_at (11), 190664_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3441342-3444585(-) 90.85 97.57
Public Domain and Genome References
Ensembl F27E11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503965 Caenorhabditis FriZzled homolog family member (cfz-2) [Caenorhabditis elegans] 0.0
blast ABA54421 Caenorhabditis frizzled homolog protein 2, isoform a [Caenorhabditis elegans] gb|ABA18181.1| Frizzled homolog [Caenorhabditis elegans] 0.0
blast NP_503964 Caenorhabditis FriZzled homolog family member (cfz-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000539 EMBL-EBI Frizzled protein 6.7E-108
Pfam IPR000024 EMBL-EBI Frizzled CRD region 3.2E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503965.1 6 197-219,229-251,272-294,317-339,360-382,411-430
F27E11.3a 6 197-219,229-251,272-294,317-339,360-382,411-430
Sequence
Target Sequence 
>C. ELEGANS:173988_AT
cctgacaagctgtagtgctcaagaaatgcatatttaatatttgtgatccccgcacatcta
cctcttcaggaccaactttccacaatacttgtagtcgttaaaattagttttttctcatga
gcttttacctcttctttctcaccatcatcatcccattgatctcaagttcccggcattctt
tctcagtttttttaaaagaaaagtttttgcaaataattttaatatcacaaatttaataac
taaaaacaatgtttttgtaatcttattagagtgttgttttttgaatactgcctgttcctc
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGACAAGCTGTAGTGCTCAAGAA 46 267 1817 Antisense
TAATATTTGTGATCCCCGCACATCT 508 635 1851 Antisense
CCTCTTCAGGACCAACTTTCCACAA 226 267 1877 Antisense
GGACCAACTTTCCACAATACTTGTA 373 521 1885 Antisense
ACTTTCCACAATACTTGTAGTCGTT 285 103 1891 Antisense
AAATTAGTTTTTTCTCATGAGCTTT 340 115 1917 Antisense
TCTCATGAGCTTTTACCTCTTCTTT 460 613 1929 Antisense
ACCATCATCATCCCATTGATCTCAA 217 87 1957 Antisense
TCATCCCATTGATCTCAAGTTCCCG 220 621 1964 Antisense
GTGTTGTTTTTTGAATACTGCCTGT 237 485 2087 Antisense
TTTTTGAATACTGCCTGTTCCTCTT 308 675 2094 Antisense
Sequence Source Affymetrix Proprietary Database