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[173982_s_at] macrophage migratory inhibitory factor MIF like

Description C38332_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13G3.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C38332 /WB_GENE_ID=F13G3.9 /WP=CE09371 /CHR=1 /FEA=Genomic Cluster /GEN=mif-2 /DEF=macrophage migratory inhibitory factor MIF like; C.elegans cDNA clone yk491e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 97      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 96      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 952
1 2 3 4 range
A 818.6
(-0.5)
P 		558.2
(-3)
P 		664.1
(-2)
P 		1185.9
(3)
P 		628
B 656.6
(-3)
P 		705.5
(-2.7)
P 		771.2
(-2.2)
P 		1510.3
(3)
P 		854
C 650.2
(-3)
P 		701.5
(-2.5)
P 		713.1
(-2.4)
P 		1304.5
(3)
P 		654
avr 708.5
(-2.5) 		655.1
(-3) 		716.1
(-2.5) 		1333.6
(3) 		679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 670.1
(-3)
P 		751.4
(-2)
P 		870.7
(-0.5)
P 		1151.2
(3)
P 		1097.7
(2.3)
P 		1048.9
(1.7)
P 		481
B 777.1
(-1.5)
P 		905.9
(-0.4)
P 		615.1
(-3)
P 		1014.8
(0.6)
P 		1129.4
(1.6)
P 		1279.3
(3)
P 		664
C 653.1
(-3)
P 		893.4
(-0.9)
P 		837.1
(-1.4)
P 		926.2
(-0.6)
P 		1063.3
(0.6)
P 		1341.2
(3)
P 		688
avr 700.1
(-3) 		850.2
(-1.3) 		774.3
(-2.1) 		1030.7
(0.8) 		1096.8
(1.6) 		1223.1
(3) 		523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 298
(3)
P 		121.2
(-3)
P 		173.6
(-1.2)
P 		173.6
(-1.2)
P 		177
B 209.4
(-1.6)
P 		174.2
(-3)
P 		178.7
(-2.8)
P 		321.8
(3)
P 		148
C 215.2
(-1.3)
P 		201.7
(-3)
P 		248.5
(3)
P 		220
(-0.7)
P 		47
avr 240.9
(3) 		165.7
(-3) 		200.3
(-0.2) 		238.5
(2.8) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 123.5
(-3)
P 		267.2
(1.2)
P 		189.6
(-1.1)
P 		292
(1.9)
P 		331.2
(3)
P 		255.4
(0.8)
P 		208
B 270.4
(-0.8)
P 		301.5
(-0.2)
P 		149.4
(-3)
P 		268.8
(-0.8)
P 		458.9
(2.7)
P 		477.1
(3)
P 		328
C 242.1
(-1.7)
P 		272.6
(-1)
P 		213.1
(-2.4)
P 		186.3
(-3)
P 		344.1
(0.6)
P 		449
(3)
P 		263
avr 212
(-2.2) 		280.4
(-0.2) 		184
(-3) 		249
(-1.1) 		378.1
(2.6) 		393.8
(3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173982_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22871
Sequence Type Exemplar sequence
Representative Public ID C38332 NCBI
Target Description C38332_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13G3.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C38332 /WB_GENE_ID=F13G3.9 /WP=CE09371 /CHR=1 /FEA=Genomic Cluster /GEN=mif-2 /DEF=macrophage migratory inhibitory factor MIF like; C.elegans cDNA clone yk491e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059668 NCBI Caenorhabditis elegans MIF (macrophage migration inhibitory factor) related family member (mif-3) (mif-3) mRNA, complete cds. 11/11 None
SNAP00000006945 ENSEMBL cdna:SNAP chromosome:CEL140:I:7321041:7321654:-1 11/11 None
GENEFINDER00000006947 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7321041:7321654:-1 11/11 None
F13G3.9 ENSEMBL cdna:known chromosome:CEL140:I:7320997:7321654:-1 gene:F13G3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7320938-7321586(-) 100.0 100.0
Public Domain and Genome References
Gene Title macrophage migratory inhibitory factor MIF like
Gene Symbol mif-3
Ensembl F13G3.9
Entrez Gene 172481 Entrez gene
SwissProt P90835 EMBL-EBI
WormBase CE09371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95795 Hypothetical protein F13G3.9 [Caenorhabditis elegans] ref|NP_492069.1| MIF (macrophage migration inhibitory factor) related family member (mif-3) [Caenorhabditis elegans] sp|P90835|MIF3_CAEEL MIF-like protein mif-3 1.0E-75
blast CAE66588 Hypothetical protein CBG11909 [Caenorhabditis briggsae] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001398 EMBL-EBI Macrophage migration inhibitory factor 5.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492069.1 1 126-143
F13G3.9 1 126-143
SNAP00000006945 1 126-143
GENEFINDER00000006947 1 126-143
Sequence
Target Sequence 
>C. ELEGANS:173982_S_AT
gtatccgatgggttcgaggtccgacttgcaattcatatggcgaaagtgatgaaacgtcct
gaaagccagatattcgtctcgctcgacatgaattctcgaatgacgcgaggacaattgact
gatcccttagctgttttagatgtcacatcatccacagttcttactccgattctcaccgaa
gaatacacggttgctctctgtgaattcttctcgcaggagctggctctagattctgacgca
gtcctcattaattatcgatcgctaagcccggaacttatcggattcaatggacatattctt
accgaaaatcgaccattcatctctacagatcgtgctcgcttcattattggagttctaggc
attgcgtttcttgcattcctccttcaattcctcaaatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCCGATGGGTTCGAGGTCCGAC 645 453 50 Antisense
GAGGTCCGACTTGCAATTCATATGG 251 401 65 Antisense
GAAAGCCAGATATTCGTCTCGCTCG 441 359 110 Antisense
AATTGACTGATCCCTTAGCTGTTTT 304 179 162 Antisense
TGTCACATCATCCACAGTTCTTACT 316 559 190 Antisense
TGCTCTCTGTGAATTCTTCTCGCAG 545 581 241 Antisense
GGCTCTAGATTCTGACGCAGTCCTC 380 539 271 Antisense
AATCGACCATTCATCTCTACAGATC 363 169 356 Antisense
TACAGATCGTGCTCGCTTCATTATT 296 643 373 Antisense
TAGGCATTGCGTTTCTTGCATTCCT 494 653 405 Antisense
TTCCTCCTTCAATTCCTCAAATATA 66 701 425 Antisense
Sequence Source Affymetrix Proprietary Database