[Home] | [Total List]

[173980_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description CEK012A4R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34F6.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32373 /WB_GENE_ID=C34F6.9 /WP=CE15678 /CHR=X /FEA=Genomic Cluster /DEF=Ubiquitin carboxyl-terminal hydrolases family 2; C.elegans cDNA clone yk12a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 47      6grp_highest_sub > 01_02      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 737.3
(3)
P 		332.8
(-2.7)
P 		350
(-2.5)
P 		314
(-3)
P 		423
B 752.2
(3)
P 		459.8
(-2)
P 		401.7
(-3)
P 		487.8
(-1.5)
P 		351
C 703.8
(3)
P 		468
(-2.1)
P 		428.3
(-3)
P 		483.5
(-1.8)
P 		276
avr 731.1
(3) 		420.2
(-2.5) 		393.3
(-3) 		428.4
(-2.4) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 449.1
(3)
P 		433.6
(2.6)
P 		316.3
(-0.5)
P 		218.2
(-3)
P 		375.5
(1.1)
P 		269.8
(-1.7)
P 		231
B 519
(3)
P 		448.3
(1.4)
P 		269.3
(-2.7)
P 		387.6
(0)
P 		254.9
(-3)
P 		376.9
(-0.2)
P 		264
C 399
(2)
P 		431.9
(3)
P 		384.6
(1.6)
P 		387.5
(1.7)
P 		225.2
(-3)
P 		370
(1.2)
P 		207
avr 455.7
(3) 		437.9
(2.4) 		323.4
(-1.7) 		331.1
(-1.4) 		285.2
(-3) 		338.9
(-1.1) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 268.5
(3)
P 		72.2
(-2.3)
P 		91.5
(-1.8)
P 		46
(-3)
P 		223
B 239.9
(3)
P 		113.6
(-2.2)
P 		93.1
(-3)
P 		104
(-2.6)
P 		147
C 233
(3)
P 		134.6
(-0.9)
P 		149.3
(-0.3)
P 		81.5
(-3)
P 		152
avr 247.1
(3) 		106.8
(-2) 		111.3
(-1.8) 		77.2
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 82.8
(-1.3)
P 		154.2
(3)
P 		68.9
(-2.2)
P 		55.3
(-3)
P 		113.3
(0.5)
P 		65.7
(-2.4)
P 		99
B 180.6
(3)
P 		149.2
(1.4)
P 		65.4
(-3)
P 		102.7
(-1.1)
P 		103.6
(-1)
P 		140.5
(0.9)
P 		115
C 147.9
(3)
P 		131.8
(1.7)
P 		97.9
(-1)
P 		77.9
(-2.6)
P 		72.9
(-3)
P 		123.8
(1.1)
P 		75
avr 137.1
(2.3) 		145.1
(3) 		77.4
(-3) 		78.6
(-2.9) 		96.6
(-1.3) 		110
(-0.1) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25901
Sequence Type Exemplar sequence
Representative Public ID CEK012A4R NCBI
Target Description CEK012A4R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34F6.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32373 /WB_GENE_ID=C34F6.9 /WP=CE15678 /CHR=X /FEA=Genomic Cluster /DEF=Ubiquitin carboxyl-terminal hydrolases family 2; C.elegans cDNA clone yk12a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077475 NCBI Caenorhabditis elegans C34F6.9 (C34F6.9) mRNA, complete cds. 11/11 None
C34F6.9 ENSEMBL cdna:known chromosome:CEL140:X:11218066:11222570:-1 gene:C34F6.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11218082-11222571(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl C34F6.9
Entrez Gene 181312 Entrez gene
SwissProt O17646 EMBL-EBI
WormBase CE15678 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6511 ubiquitin-dependent protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4221 ubiquitin thiolesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03946 Hypothetical protein C34F6.9 [Caenorhabditis elegans] ref|NP_509876.1| C34F6.9 [Caenorhabditis elegans] 0.0
blast CAE70679 Hypothetical protein CBG17396 [Caenorhabditis briggsae] 2.0E-65
Sequence
Target Sequence 
>C. ELEGANS:173980_AT
gagtatccaatagttcaattttcctattaagttagctttaattttatgttcttcttagaa
actcatgctaaatttttgcactgttttatctttttatcctatgttctgttttaaaactat
ccacttttcttccatatctctgacatcgttcccattctttaacttttggatctctcattc
tatatttttagagaattcctcccatttcccgatttcacattttcttcccagtaattttgg
caatttatccttgccatgttccgattttctcgtttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATCCAATAGTTCAATTTTCCT 483 399 3547 Antisense
ATCTTTTTATCCTATGTTCTGTTTT 601 31 3634 Antisense
TAAAACTATCCACTTTTCTTCCATA 422 639 3658 Antisense
TTTCTTCCATATCTCTGACATCGTT 148 673 3672 Antisense
CATCGTTCCCATTCTTTAACTTTTG 460 211 3690 Antisense
AACTTTTGGATCTCTCATTCTATAT 501 139 3707 Antisense
TATTTTTAGAGAATTCCTCCCATTT 94 663 3729 Antisense
CATTTCCCGATTTCACATTTTCTTC 510 213 3749 Antisense
TCACATTTTCTTCCCAGTAATTTTG 521 627 3761 Antisense
GCAATTTATCCTTGCCATGTTCCGA 387 323 3786 Antisense
ATGTTCCGATTTTCTCGTTTGTTCA 315 47 3802 Antisense
Sequence Source Affymetrix Proprietary Database