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[173979_at]

Description CE6441 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=PAR2.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01644 /WB_GENE_ID=PAR2.4 /WP=CE00848 /CHR=3 /FEA=Genomic Cluster /DEF=wEST02365 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEEST67, mRNA sequence.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 428
(3)
P 		306.9
(-0.4)
P 		217.3
(-3)
P 		269.3
(-1.5)
P 		211
B 386.4
(1.8)
P 		305.3
(-1.3)
P 		260.7
(-3)
P 		417.2
(3)
P 		157
C 411.6
(3)
P 		250.4
(-2.3)
P 		230
(-3)
P 		258.8
(-2)
P 		182
avr 408.7
(3) 		287.5
(-1.2) 		236
(-3) 		315.1
(-0.3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 310.1
(-0.5)
P 		322
(-0.1)
P 		213.3
(-3)
P 		216.9
(-2.9)
P 		297.2
(-0.8)
P 		441.6
(3)
P 		228
B 421.2
(2.8)
P 		366.6
(1.7)
P 		134.5
(-3)
P 		232.5
(-1)
P 		289.7
(0.1)
P 		431.2
(3)
P 		297
C 487.4
(3)
P 		238.4
(-1.9)
P 		244.4
(-1.8)
P 		182.1
(-3)
P 		349.6
(0.3)
P 		387.2
(1)
P 		305
avr 406.2
(2.6) 		309
(0) 		197.4
(-3) 		210.5
(-2.6) 		312.2
(0.1) 		420
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 155.8
(3)
P 		66.6
(-1.6)
P 		56.8
(-2.1)
P 		39.4
(-3)
P 		116
B 123.2
(3)
P 		75.4
(-1.6)
P 		60.4
(-3)
P 		88.9
(-0.3)
P 		63
C 136.3
(3)
P 		72
(-1.2)
P 		80.2
(-0.6)
P 		43.6
(-3)
P 		93
avr 138.4
(3) 		71.3
(-2) 		65.8
(-2.4) 		57.3
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 57.2
(-2.1)
P 		114.5
(3)
P 		46.5
(-3)
P 		55
(-2.3)
P 		89.7
(0.8)
P 		107.5
(2.4)
P 		68
B 146.5
(2.3)
P 		122
(1.2)
P 		32.7
(-3)
P 		61.6
(-1.6)
P 		117.7
(1)
P 		160.8
(3)
P 		128
C 180.6
(3)
P 		72.7
(-1.5)
P 		62.2
(-1.9)
P 		36.6
(-3)
P 		113.1
(0.2)
P 		129.6
(0.9)
P 		144
avr 128.1
(2.7) 		103.1
(0.9) 		47.1
(-3) 		51.1
(-2.7) 		106.8
(1.2) 		132.6
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23916
Sequence Type Exemplar sequence
Representative Public ID CE6441 NCBI
Target Description CE6441 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=PAR2.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T01644 /WB_GENE_ID=PAR2.4 /WP=CE00848 /CHR=3 /FEA=Genomic Cluster /DEF=wEST02365 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEEST67, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066533, NM_181942
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
PAR2.4a.3 ENSEMBL cdna:known chromosome:CEL140:III:8763193:8767244:-1 gene:PAR2.4 11/11 None
PAR2.4a.1 ENSEMBL cdna:known chromosome:CEL140:III:8763448:8767237:-1 gene:PAR2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066533 7/11 Cross Hyb Matching Probes None
PAR2.4a.2 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8763511-8767108(-) 100.0 100.0
Public Domain and Genome References
Ensembl PAR2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50619 Hypothetical protein PAR2.4a [Caenorhabditis elegans] ref|NP_498934.1| PAR2.4a [Caenorhabditis elegans] dbj|BAD80738.1| chondroitin polymerizing factor [Caenorhabditis elegans] sp|P45895|YNA4_CAEEL Hypothetical protein PAR2.4 in chromosome III 0.0
blast CAE62751 Hypothetical protein CBG06915 [Caenorhabditis briggsae] 0.0
blast AAN65312 Hypothetical protein PAR2.4b [Caenorhabditis elegans] ref|NP_871671.1| PAR2.4b [Caenorhabditis elegans] dbj|BAD80739.1| chondroitin polymerizing factor-S [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008428 EMBL-EBI Chondroitin N-acetylgalactosaminyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
PAR2.4a.3 1 7-29
PAR2.4a.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:173979_AT
tccacgaaaaatgaacacccttctactcccaacttgtccatgatatttctgcaaatacgg
tttcctattttccctttctcaccttcctattgcactacaattttcactttgccctcttgc
tccgagcataacattttcttttcatgtgaatacgataatcccggcggtttttcattaaat
aatttttagcccgcttgccacaacccgatgctttatccccgtcgtcaaataattcatttt
ttacagtttatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACGAAAAATGAACACCCTTCTA 192 587 2415 Antisense
TCTACTCCCAACTTGTCCATGATAT 155 615 2436 Antisense
CCAACTTGTCCATGATATTTCTGCA 172 277 2443 Antisense
ATTTCTGCAAATACGGTTTCCTATT 136 17 2459 Antisense
GCACTACAATTTTCACTTTGCCCTC 139 317 2506 Antisense
TGCCCTCTTGCTCCGAGCATAACAT 179 585 2524 Antisense
TCCGAGCATAACATTTTCTTTTCAT 268 595 2535 Antisense
TGTGAATACGATAATCCCGGCGGTT 553 553 2559 Antisense
TAAATAATTTTTAGCCCGCTTGCCA 535 639 2590 Antisense
TATCCCCGTCGTCAAATAATTCATT 685 625 2628 Antisense
ATAATTCATTTTTTACAGTTTATGT 160 27 2643 Antisense
Sequence Source Affymetrix Proprietary Database