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[173978_at]

Description CE637 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C32D5.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T00637 /WB_GENE_ID=C32D5.5 /WP=CE01845 /CHR=2 /FEA=Genomic Cluster /DEF=wEST01358 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESH37, mRNA sequence.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 53      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 488.7
(3)
P 		374.1
(-0.5)
P 		392.4
(0.1)
P 		292.1
(-3)
P 		197
B 578
(3)
P 		429
(-0.2)
P 		346.8
(-2)
P 		298.7
(-3)
P 		279
C 515.6
(3)
P 		490.9
(2.4)
P 		441.4
(1.2)
P 		270.7
(-3)
P 		245
avr 527.4
(3) 		431.3
(0.6) 		393.5
(-0.3) 		287.2
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 609.7
(2.3)
P 		468.8
(-0.8)
P 		505
(-0)
P 		369.6
(-3)
P 		642.2
(3)
P 		604
(2.2)
P 		273
B 604.3
(1.3)
P 		475.7
(-0.1)
P 		211.3
(-3)
P 		497.9
(0.1)
P 		599.7
(1.3)
P 		759.2
(3)
P 		548
C 487.5
(-1.8)
P 		427.9
(-2.5)
P 		388.9
(-3)
P 		700.9
(0.7)
P 		503.8
(-1.7)
P 		900.6
(3)
P 		512
avr 567.2
(0.1) 		457.5
(-1.6) 		368.4
(-3) 		522.8
(-0.6) 		581.9
(0.3) 		754.6
(3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 177.9
(3)
P 		81.2
(-1.3)
P 		102.6
(-0.3)
P 		42.8
(-3)
P 		135
B 184.3
(3)
P 		105.9
(-0.9)
P 		80.4
(-2.2)
P 		63.7
(-3)
P 		121
C 170.7
(3)
P 		141.1
(1.6)
P 		153.8
(2.2)
P 		45.6
(-3)
P 		125
avr 177.6
(3) 		109.4
(-0.2) 		112.3
(-0.1) 		50.7
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 112.4
(-1.9)
P 		166.7
(1.4)
P 		110
(-2)
P 		93.7
(-3)
P 		193.8
(3)
P 		147.1
(0.2)
P 		100
B 210.3
(1.1)
P 		158.4
(-0.2)
P 		51.3
(-3)
P 		131.9
(-0.9)
P 		243.7
(2)
P 		283.1
(3)
P 		232
C 180.7
(-0.6)
P 		130.6
(-2.1)
P 		99
(-3)
P 		140.9
(-1.8)
P 		163
(-1.1)
P 		301.5
(3)
P 		203
avr 167.8
(0.1) 		151.9
(-0.5) 		86.8
(-3) 		122.2
(-1.6) 		200.2
(1.3) 		243.9
(3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23572
Sequence Type Exemplar sequence
Representative Public ID CE637 NCBI
Target Description CE637 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C32D5.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=T00637 /WB_GENE_ID=C32D5.5 /WP=CE01845 /CHR=2 /FEA=Genomic Cluster /DEF=wEST01358 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESH37, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062871 NCBI Caenorhabditis elegans C32D5.5 (C32D5.5) mRNA, complete cds. 11/11 None
C32D5.5.1 ENSEMBL cdna:known chromosome:CEL140:II:6329799:6331233:-1 gene:C32D5.5 11/11 A 
C32D5.5.2 ENSEMBL cdna:known chromosome:CEL140:II:6329799:6331559:-1 gene:C32D5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6329868-6331201(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-337
Ensembl C32D5.5
Entrez Gene 174045 Entrez gene
SwissProt Q09265 EMBL-EBI
WormBase CE01845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18594.1.S1_S_AT similar to suppressor of variegation 4-20 homolog 1 isoform 2 cfa
CANINE_2:CFAAFFX.17055.1.S1_S_AT similar to suppressor of variegation 4-20 homolog 1 isoform 2 cfa
CHICKEN:GGA.12280.1.S1_AT suppressor of variegation 4-20 homolog 1 (Drosophila) gga
CHICKEN:GGA.12668.1.S1_AT suppressor of variegation 4-20 homolog 1 (Drosophila) gga
HG-U133B:222759_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:222759_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:218242_S_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133A:218242_S_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133A_2:218242_S_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HU35KSUBA:RC_AA251776_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HU35KSUBB:RC_Z40898_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HU35KSUBC:RC_AA448268_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:G8923045_3P_A_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:G12803398_3P_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:HS.267448.0.S2_3P_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:222566_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133B:222566_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U95B:45309_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U95B:45310_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U95B:49417_AT suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:HS2.352659.1.S1_3P_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:1565975_3P_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:1565975_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:1565974_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:242646_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133B:242646_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133_PLUS_2:243105_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U133B:243105_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U95C:63115_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HG-U95D:75034_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HU35KSUBA:H78550_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
HU35KSUBD:RC_R01073_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:HS.191202.0.A1_3P_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
U133_X3P:HS.279701.0.A1_3P_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) hs
MOE430A:1455171_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430A_2:1455171_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430_2:1455171_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430_2:1451817_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430A_2:1451817_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOE430A:1451817_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430_2:1442764_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOE430B:1442764_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MG-U74BV2:114569_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MG-U74BV2:116096_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MG-U74CV2:130823_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOE430A:1434999_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430A_2:1434999_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MOUSE430_2:1434999_AT suppressor of variegation 4-20 homolog 1 (Drosophila) mm
MG-U74BV2:114401_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (Suv420h1), mRNA mm
MU19KSUBC:TC38383_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (Suv420h1), mRNA mm
MU19KSUBC:TC40122_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (Suv420h1), mRNA mm
RG-U34C:RC_AI176517_AT suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) rn
RAE230A:1390198_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) rn
RAT230_2:1390198_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) rn
RG-U34B:RC_AA901207_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) rn
RG-U34B:RC_AI012516_AT Suppressor of variegation 4-20 homolog 1 (Drosophila) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC46793 Hypothetical protein C32D5.5 [Caenorhabditis elegans] ref|NP_495272.1| C32D5.5 [Caenorhabditis elegans] sp|Q09265|YQD5_CAEEL Hypothetical protein C32D5.5 in chromosome II 1.0E-170
blast CAE59294 Hypothetical protein CBG02629 [Caenorhabditis briggsae] 1.0E-121
blast AAH85544 Zgc:103527 [Danio rerio] ref|NP_001007338.1| hypothetical protein LOC492465 [Danio rerio] 4.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.2E-6
Sequence
Target Sequence 
>C. ELEGANS:173978_AT
cgctcacgatcctaaatcataattttcaatcatttttacaaattaattcatgttccatgg
ccagtgtaaatacgatatcttttacgaagagaagcattggcttttcttttctttaaattc
tgatatcaaatttctattttcagtatagcacagccccagtaccagtaccgcagttttcag
tacactagatacctgaaatccatagcgatcccaaagaaactttcttccccctttcctttt
tggttcttgtgtgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTCACGATCCTAAATCATAATTT 559 255 866 Antisense
ATTAATTCATGTTCCATGGCCAGTG 182 13 907 Antisense
GTTCCATGGCCAGTGTAAATACGAT 190 441 917 Antisense
TTTCTTTTCTTTAAATTCTGATATC 92 673 968 Antisense
TTTTCAGTATAGCACAGCCCCAGTA 46 675 1002 Antisense
CCCAGTACCAGTACCGCAGTTTTCA 22 257 1020 Antisense
TACCGCAGTTTTCAGTACACTAGAT 581 647 1031 Antisense
AGTACACTAGATACCTGAAATCCAT 212 63 1044 Antisense
TACCTGAAATCCATAGCGATCCCAA 570 649 1055 Antisense
TAGCGATCCCAAAGAAACTTTCTTC 481 651 1068 Antisense
TTCCTTTTTGGTTCTTGTGTGTGTA 230 697 1098 Antisense
Sequence Source Affymetrix Proprietary Database