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[173973_at] L96 protein (tipula iridescent virus (TIV) (weak))

Description CEC3832 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T14G11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09383 /WB_GENE_ID=T14G11.3 /WP=CE04961 /CHR=X /FEA=Genomic Cluster /DEF=L96 protein (tipula iridescent virus (TIV) (weak)); C.elegans cDNA clone yk167f11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 12      4grp_highest_8_8 > 24      4grp_high_8_8 > 60      6grp_highest_nonorm > 13      6grp_total > 33      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2402
1 2 3 4 range
A 2870.3
(1.5)
P 		3384.3
(3)
P 		3337.6
(2.9)
P 		1258.5
(-3)
P 		2126
B 3204.5
(2.7)
P 		3212.9
(2.8)
P 		3295
(3)
P 		1183.8
(-3)
P 		2111
C 3046.5
(2.2)
P 		3273.5
(2.7)
P 		3374.8
(3)
P 		982.7
(-3)
P 		2392
avr 3040.4
(2.2) 		3290.2
(2.9) 		3335.8
(3) 		1141.7
(-3) 		2194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1985
1 2 3 4 5 6 range
A 3244.8
(3)
P 		2753.4
(1.3)
P 		3233.1
(3)
P 		1912.9
(-1.7)
P 		2446.5
(0.2)
P 		1548.6
(-3)
P 		1696
B 2953.1
(3)
P 		2728.7
(2)
P 		2626.6
(1.5)
P 		2950.5
(3)
P 		1887.1
(-1.9)
P 		1653.7
(-3)
P 		1299
C 3210.5
(3)
P 		2596.6
(1.1)
P 		3183.4
(2.9)
P 		2021.8
(-0.7)
P 		2254.3
(0.1)
P 		1260.2
(-3)
P 		1950
avr 3136.1
(3) 		2692.9
(1.4) 		3014.4
(2.6) 		2295.1
(-0.1) 		2196
(-0.4) 		1487.5
(-3) 		1649
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1011
1 2 3 4 range
A 1045.1
(3)
P 		734.6
(0.8)
P 		872.5
(1.8)
P 		184.2
(-3)
P 		861
B 1021.9
(3)
P 		793.5
(1.2)
P 		763.5
(1)
P 		252.3
(-3)
P 		770
C 1008.5
(2)
P 		941.1
(1.6)
P 		1176.2
(3)
P 		165.7
(-3)
P 		1011
avr 1025.2
(3) 		823.1
(1.5) 		937.4
(2.4) 		200.7
(-3) 		825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 598.2
(-0.8)
P 		979.3
(3)
P 		704.1
(0.3)
P 		485.2
(-1.9)
P 		738.2
(0.6)
P 		377
(-3)
P 		602
B 1027.5
(3)
P 		908.3
(1.3)
P 		637.8
(-2.7)
P 		781.5
(-0.6)
P 		766.7
(-0.8)
P 		616.6
(-3)
P 		411
C 1190
(3)
P 		792.3
(-0)
P 		810.2
(0.1)
P 		406.6
(-3)
P 		729.5
(-0.5)
P 		421.9
(-2.9)
P 		783
avr 938.6
(3) 		893.3
(2.4) 		717.4
(0.2) 		557.8
(-1.9) 		744.8
(0.5) 		471.8
(-3) 		467
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26176
Sequence Type Exemplar sequence
Representative Public ID CEC3832 NCBI
Target Description CEC3832 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T14G11.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09383 /WB_GENE_ID=T14G11.3 /WP=CE04961 /CHR=X /FEA=Genomic Cluster /DEF=L96 protein (tipula iridescent virus (TIV) (weak)); C.elegans cDNA clone yk167f11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076074 NCBI Caenorhabditis elegans T14G11.3 (T14G11.3) mRNA, complete cds. 11/11 None
T14G11.3.1 ENSEMBL cdna:known chromosome:CEL140:X:2682826:2687177:-1 gene:T14G11.3 11/11 A 
T14G11.3.2 ENSEMBL cdna:known chromosome:CEL140:X:2682840:2687179:-1 gene:T14G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2682846-2688785(-) 100.0 100.0
Public Domain and Genome References
Gene Title L96 protein (tipula iridescent virus (TIV) (weak))
Ensembl T14G11.3
Entrez Gene 180566 Entrez gene
SwissProt Q22505 EMBL-EBI
WormBase CE33696 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604353_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE:1599639_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE:1588996_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE_2:CFA.3180.1.S1_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE_2:CFA.3180.2.S1_S_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE_2:CFA.9412.1.A1_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
CANINE_2:CFAAFFX.12210.1.S1_S_AT similar to Mitochondrial inner membrane protein (Mitofilin) (p87/89) (Proliferation-inducing gene 4 protein) cfa
DROSOPHILA_2:1639242_A_AT dm
DROSGENOME1:151979_AT dm
CHICKEN:GGAAFFX.11505.1.S1_S_AT inner membrane protein, mitochondrial (mitofilin) gga
CHICKEN:GGA.17615.1.S1_AT Inner membrane protein, mitochondrial (mitofilin) gga
HG-U133A:200955_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U133_PLUS_2:200955_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-FOCUS:200955_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U133A_2:200955_AT inner membrane protein, mitochondrial (mitofilin) hs
HUGENEFL:L42572_AT inner membrane protein, mitochondrial (mitofilin) hs
U133_X3P:G5803114_3P_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U95AV2:37659_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U95D:85003_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U95D:85005_G_AT inner membrane protein, mitochondrial (mitofilin) hs
HG-U133_PLUS_2:239366_AT Inner membrane protein, mitochondrial (mitofilin) hs
HG-U133B:239366_AT Inner membrane protein, mitochondrial (mitofilin) hs
HG-U133_PLUS_2:242361_AT Inner membrane protein, mitochondrial (mitofilin) hs
HG-U133B:242361_AT Inner membrane protein, mitochondrial (mitofilin) hs
HG-U95C:63092_AT Inner membrane protein, mitochondrial (mitofilin) hs
HG-U95E:83062_AT Inner membrane protein, mitochondrial (mitofilin) hs
HU35KSUBB:RC_T87111_AT Inner membrane protein, mitochondrial (mitofilin) hs
U133_X3P:HS.148559.0.A1_3P_AT Inner membrane protein, mitochondrial (mitofilin) hs
U133_X3P:HS.271773.0.A1_3P_AT Inner membrane protein, mitochondrial (mitofilin) hs
MU11KSUBA:AA542174_G_AT inner membrane protein, mitochondrial mm
MU11KSUBA:AA542174_AT inner membrane protein, mitochondrial mm
MG-U74AV2:162006_R_AT inner membrane protein, mitochondrial mm
MOE430A:1429534_A_AT inner membrane protein, mitochondrial mm
MOUSE430A_2:1429534_A_AT inner membrane protein, mitochondrial mm
MOUSE430_2:1429534_A_AT inner membrane protein, mitochondrial mm
MOE430A:1433470_A_AT inner membrane protein, mitochondrial mm
MOUSE430A_2:1433470_A_AT inner membrane protein, mitochondrial mm
MOUSE430_2:1433470_A_AT inner membrane protein, mitochondrial mm
MOE430A:1429533_AT inner membrane protein, mitochondrial mm
MOUSE430A_2:1429533_AT inner membrane protein, mitochondrial mm
MOUSE430_2:1429533_AT inner membrane protein, mitochondrial mm
MG-U74AV2:100589_AT Inner membrane protein, mitochondrial (Immt), mRNA mm
MU19KSUBC:TC39616_AT Inner membrane protein, mitochondrial (Immt), mRNA mm
MU19KSUBC:TC39616_G_AT Inner membrane protein, mitochondrial (Immt), mRNA mm
MU19KSUBC:TC39617_AT Inner membrane protein, mitochondrial (Immt), mRNA mm
RAE230A:1380154_AT inner membrane protein, mitochondrial (predicted) rn
RAT230_2:1380154_AT inner membrane protein, mitochondrial (predicted) rn
RAE230B:1385423_AT inner membrane protein, mitochondrial (predicted) rn
RAT230_2:1385423_AT inner membrane protein, mitochondrial (predicted) rn
RG-U34C:RC_AI176477_AT Inner membrane protein, mitochondrial (predicted) rn
RAE230A:1372080_AT Inner membrane protein, mitochondrial (predicted) rn
RAT230_2:1372080_AT Inner membrane protein, mitochondrial (predicted) rn
RAE230A:1375597_AT Inner membrane protein, mitochondrial (predicted) rn
RAT230_2:1375597_AT Inner membrane protein, mitochondrial (predicted) rn
RAE230B:1395060_AT Inner membrane protein, mitochondrial (predicted) rn
RAT230_2:1395060_AT Inner membrane protein, mitochondrial (predicted) rn
RG-U34A:RC_AI639260_AT Inner membrane protein, mitochondrial (predicted) rn
RG-U34C:RC_AI231567_AT Inner membrane protein, mitochondrial (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA82345 Hypothetical protein T14G11.3 [Caenorhabditis elegans] ref|NP_508475.2| T14G11.3 [Caenorhabditis elegans] 0.0
blast CAE58845 Hypothetical protein CBG02064 [Caenorhabditis briggsae] 0.0
blast CAA16516 Hypothetical protein W06H3.1 [Caenorhabditis elegans] ref|NP_507241.2| W06H3.1 [Caenorhabditis elegans] 4.0E-80
Sequence
Target Sequence 
>C. ELEGANS:173973_AT
caattgattgtcttgcgtcaccgttttttaaaattgtgttctactggttttcactacact
cattttatttttctctatttctcaccctatttaaaacgatccaaatgttttaaaaacgtt
ttgctgctagtagtattgtgtgtgtgtcttttagaaaccaatttcttgttggtagtttat
agtagatgggtgtgtgcacattttctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGATTGTCTTGCGTCACCGTT 644 179 2200 Antisense
TTGTGTTCTACTGGTTTTCACTACA 74 709 2233 Antisense
TACTGGTTTTCACTACACTCATTTT 454 647 2241 Antisense
TCACTACACTCATTTTATTTTTCTC 473 625 2250 Antisense
TCTCTATTTCTCACCCTATTTAAAA 676 609 2271 Antisense
TCTCACCCTATTTAAAACGATCCAA 103 611 2279 Antisense
AAAACGTTTTGCTGCTAGTAGTATT 617 111 2312 Antisense
GTAGTATTGTGTGTGTGTCTTTTAG 149 457 2329 Antisense
TGTGTGTCTTTTAGAAACCAATTTC 274 555 2340 Antisense
ATTTCTTGTTGGTAGTTTATAGTAG 475 13 2360 Antisense
GATGGGTGTGTGCACATTTTCTCCC 201 409 2384 Antisense
Sequence Source Affymetrix Proprietary Database